Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400065769 | Potato | nucleus, plasma membrane, vacuole | 1.73 | 3.95 |
| AT3G59100.1 | Thale cress | cytosol | 14.41 | 2.6 |
| AT3G14570.1 | Thale cress | cytosol | 14.41 | 2.53 |
| AT2G13680.1 | Thale cress | cytosol | 13.54 | 2.44 |
| AT4G03550.1 | Thale cress | plasma membrane | 12.1 | 2.36 |
| AT5G36870.1 | Thale cress | cytosol, mitochondrion, plasma membrane | 12.68 | 2.35 |
| AT2G31960.3 | Thale cress | cytosol | 12.97 | 2.31 |
| AT1G06490.1 | Thale cress | cytosol | 12.97 | 2.3 |
| AT1G05570.1 | Thale cress | cytosol, mitochondrion, plasma membrane | 12.68 | 2.26 |
| AT5G13000.1 | Thale cress | cytosol, mitochondrion, nucleus, plasma membrane | 12.68 | 2.25 |
| AT4G04970.1 | Thale cress | cytosol | 11.24 | 2.21 |
| AT2G36850.1 | Thale cress | mitochondrion | 11.82 | 2.15 |
| AT3G07160.2 | Thale cress | cytosol | 11.53 | 2.11 |
| KRG94407 | Soybean | extracellular | 0.29 | 1.18 |
| Zm00001d045037_P001 | Maize | cytosol | 0.29 | 0.86 |
| Bra005622.1-P | Field mustard | cytosol | 0.0 | 0.0 |
| CDY42081 | Canola | cytosol | 0.0 | 0.0 |
| CDY67195 | Canola | cytosol | 0.0 | 0.0 |
| KRH00819 | Soybean | cytosol, extracellular | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.25.40.270 | MapMan:35.1 | EntrezGene:820706 | ProteinID:AEE75566.1 | EMBL:AK119031 | ArrayExpress:AT3G14780 |
| EnsemblPlantsGene:AT3G14780 | RefSeq:AT3G14780 | TAIR:AT3G14780 | RefSeq:AT3G14780-TAIR-G | EnsemblPlants:AT3G14780.1 | TAIR:AT3G14780.1 |
| Unigene:At.39176 | EMBL:BT005442 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0016740 | InterPro:IPR023175 | EMBL:KJ138826 | RefSeq:NP_188096.2 | PFAM:PF03004 | PFAM:PF04652 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR12741 | PANTHER:PTHR12741:SF27 | InterPro:Probable_transposase_24 | UniProt:Q8GW77 | UniParc:UPI000000C65A |
| InterPro:VPS_Vta1/CALS_N | SEG:seg | : | : | : | : |
Description
Callose synthase [Source:UniProtKB/TrEMBL;Acc:Q8GW77]
Coordinates
chr3:-:4961777..4963569
Molecular Weight (calculated)
40799.1 Da
IEP (calculated)
4.688
GRAVY (calculated)
-0.844
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSNEIAPVD PTDVFLDMDP ILPEDSPATS LFTRPLALKE QYVWEPYDSE KLPETLASGI QRFLRVANLV ESDDPRVAYL CRFYTFEEAH RIDSRSNGRG
101: VRQFKNSLLR RLEKDDEFTI RRRKEINDHK ELKRVYHAYN EYIIRHGASF NLDNSQQEKL INARSIASVL YEILRKIESS MGRASTPESI QLNRDEEIGE
201: LLDMDTSMEE TNKINSDETF VDQKAELVVE KSKVLEDERL TQMFQGDHQY LTQDEKDDIY KEEVQIKKDK RFAYGSMKAV PSLFYEDKYL ETQEKLNKLE
301: KKIEEMELKL KDVDFWTNMM QNMFPDQVPP SMRANQTDNN KNDKLSL
101: VRQFKNSLLR RLEKDDEFTI RRRKEINDHK ELKRVYHAYN EYIIRHGASF NLDNSQQEKL INARSIASVL YEILRKIESS MGRASTPESI QLNRDEEIGE
201: LLDMDTSMEE TNKINSDETF VDQKAELVVE KSKVLEDERL TQMFQGDHQY LTQDEKDDIY KEEVQIKKDK RFAYGSMKAV PSLFYEDKYL ETQEKLNKLE
301: KKIEEMELKL KDVDFWTNMM QNMFPDQVPP SMRANQTDNN KNDKLSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.