Factsheet for AT5G13000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023386.1-P	Field mustard	cytosol, mitochondrion, nucleus, plasma membrane	96.62	96.72
CDX85677	Canola	cytosol, mitochondrion, nucleus, plasma membrane	96.62	96.72
CDX91152	Canola	cytosol, mitochondrion, nucleus, plasma membrane	96.47	96.52
CDX97217	Canola	cytosol	96.11	96.06
CDX69678	Canola	cytosol	96.11	96.06
Bra008864.1-P	Field mustard	cytosol, plastid	94.02	95.23
VIT_06s0004g01270.t01	Wine grape	cytosol, mitochondrion, nucleus, plasma membrane	86.75	86.35
KRH01816	Soybean	cytosol	85.68	85.55
KRH46871	Soybean	mitochondrion	85.63	85.5
PGSC0003DMT400082011	Potato	mitochondrion	83.79	84.09
Solyc01g006370.2.1	Tomato	nucleus	83.48	83.78
Zm00001d014865_P001	Maize	cytosol	26.34	83.74
Zm00001d018565_P002	Maize	cytosol	27.83	83.69
Os02t0832500-01	Rice	plasma membrane	12.84	80.71
GSMUA_Achr1P15040_001	Banana	mitochondrion	31.41	80.68
Os03t0128100-01	Rice	cytosol, plasma membrane	25.68	80.19
Os06t0728800-01	Rice	plasma membrane	11.3	80.07
GSMUA_Achr1P15030_001	Banana	mitochondrion	48.03	78.58
AT2G31960.3	Thale cress	cytosol	77.03	77.23
AT1G05570.1	Thale cress	cytosol, mitochondrion, plasma membrane	76.93	77.13
OQU86033	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	76.47	76.59
Zm00001d027475_P001	Maize	mitochondrion, plastid	12.07	76.38
EER90434	Sorghum	plastid	76.73	76.34
Zm00001d036351_P098	Maize	plastid	76.57	76.26
Os02t0832400-02	Rice	nucleus, peroxisome, plasma membrane, plastid	36.37	75.56
Os03t0128200-01	Rice	mitochondrion	20.82	75.51
TraesCS7B01G480300.1	Wheat	plastid	75.7	75.43
TraesCS6B01G468200.1	Wheat	golgi, unclear	75.96	75.34
TraesCS7D01G554900.1	Wheat	plastid	75.75	75.33
TraesCS6D01G405600.1	Wheat	plastid	75.86	75.32
TraesCS7A01G555700.1	Wheat	plastid	75.45	75.26
TraesCS6A01G420100.1	Wheat	plastid	75.81	75.04
Os06t0728902-01	Rice	plastid	7.31	74.48
Zm00001d018560_P002	Maize	plastid	23.02	74.38
Zm00001d027472_P002	Maize	mitochondrion	73.04	73.38
OQU93328	Sorghum	mitochondrion	73.09	73.13
TraesCS4B01G321300.2	Wheat	mitochondrion	71.51	71.84
TraesCS5A01G490800.2	Wheat	mitochondrion	71.46	71.79
TraesCS4D01G317900.5	Wheat	mitochondrion	71.61	71.68
Zm00001d014867_P001	Maize	plastid	40.0	71.09
Zm00001d018562_P003	Maize	golgi	20.82	68.98
Zm00001d014866_P002	Maize	cytosol, extracellular	6.14	68.97
AT5G36870.1	Thale cress	cytosol, mitochondrion, plasma membrane	61.07	63.82
AT2G13680.1	Thale cress	cytosol	61.28	62.3
AT3G59100.1	Thale cress	cytosol	55.24	56.22
AT1G06490.1	Thale cress	cytosol	55.81	55.72
AT3G14570.1	Thale cress	cytosol	54.37	53.8
AT4G04970.1	Thale cress	cytosol	41.48	45.87
AT4G03550.1	Thale cress	plasma membrane	41.59	45.67
AT3G07160.2	Thale cress	cytosol	43.89	45.35
AT2G36850.1	Thale cress	mitochondrion	44.04	45.22
AT3G14780.1	Thale cress	nucleus	2.25	12.68

Protein Annotations

KEGG:00500+2.4.1.34	Gene3D:1.25.40.270	MapMan:21.7.1	EntrezGene:831140	ProteinID:AED91839.1	ProteinID:AED91840.1
ArrayExpress:AT5G13000	EnsemblPlantsGene:AT5G13000	RefSeq:AT5G13000	TAIR:AT5G13000	RefSeq:AT5G13000-TAIR-G	EnsemblPlants:AT5G13000.1
TAIR:AT5G13000.1	Symbol:ATGSL12	Unigene:At.32120	ProteinID:CAB88264.1	InterPro:CALS	ncoils:Coil
InterPro:FKS1-like_dom1	GO:GO:0000148	GO:GO:0003674	GO:GO:0003824	GO:GO:0003843	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0005975	GO:GO:0006075	GO:GO:0008150	GO:GO:0008152
GO:GO:0008360	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016740	GO:GO:0016757	GO:GO:0071555	InterPro:Glyco_trans_48	InterPro:IPR023175
RefSeq:NP_001154712.2	RefSeq:NP_196804.6	PFAM:PF02364	PFAM:PF04652	PFAM:PF14288	PO:PO:0000013
PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PANTHER:PTHR12741	PANTHER:PTHR12741:SF21	UniProt:Q9LXT9	SMART:SM01205	TMHMM:TMhelix	UniParc:UPI0001E9304B
InterPro:VPS_Vta1/CALS_N	SEG:seg	:	:	:	:

Description

CALS3Callose synthase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXT9]

Coordinates

chr5:-:4110171..4121489

Molecular Weight (calculated)

226196.0 Da

IEP (calculated)

9.406

GRAVY (calculated)

-0.107

Length

1955 amino acids

Sequence
(BLAST)

0001: MSATRGGPDQ GPSQPQQRRI IRTQTAGNLG ESFDSEVVPS SLVEIAPILR VANEVESSNP RVAYLCRFYA FEKAHRLDPT SSGRGVRQFK TALLQRLERE
0101: HDPTLMGRVK KSDAREMQSF YQHYYKKYIQ ALHNAADKAD RAQLTKAYQT ANVLFEVLKA VNLTQSIEVD REILEAQDKV AEKTQLYVPY NILPLDPDSA
0201: NQAIMRYPEI QAAVLALRNT RGLPWPEGHK KKKDEDMLDW LQEMFGFQKD NVANQREHLI LLLANVHIRQ FPKPDQQPKL DDQALTEVMK KLFKNYKKWC
0301: KYLGRKSSLW LPTIQQEMQQ RKLLYMALYL LIWGEAANLR FMPECLCYIY HHMAFELYGM LAGNVSPMTG ENVKPAYGGE EDAFLRKVVT PIYEVIQMEA
0401: QRSKKGKSKH SQWRNYDDLN EYFWSVDCFR LGWPMRADAD FFCLPVAVPN TEKDGDNSKP IVARDRWVGK VNFVEIRSFW HVFRSFDRMW SFYILCLQAM
0501: IIMAWDGGQP SSVFGADVFK KVLSVFITAA IMKLGQAVLD VILNFKAHQS MTLHVKLRYI LKVFSAAAWV IILPVTYAYS WKDPPAFART IKSWFGSAMH
0601: SPSLFIIAVV SYLSPNMLAG VMFLFPLLRR FLERSNYRIV MLMMWWSQPR LYVGRGMHES AFSLFKYTMF WVLLIATKLA FSYYIEIRPL VAPTQAIMKA
0701: RVTNFQWHEF FPRAKNNIGV VIALWAPIIL VYFMDSQIWY AIFSTLFGGI YGAFRRLGEI RTLGMLRSRF ESLPGAFNDR LIPDGKNQQK KKGIRATLSH
0801: NFTEDKVPVN KEKEAARFAQ LWNTIISSFR EEDLISDREM DLLLVPYWAD RDLDLIQWPP FLLASKIPIA LDMAKDSNGK DRELKKRIES DTYMKCAVRE
0901: CYASFKNIIK FVVQGNREKE VIEIIFAEVD KHIDTGDLIQ EYKMSALPSL YDHFVKLIKY LLDNKEEDRD HVVILFQDML EVVTRDIMME DYNISSLVDS
1001: SHGGTWHGGM IPLEQQYQLF ASSGAIRFPI EPVTEAWKEK IKRIYLLLTT KESAMDVPSN LEARRRISFF SNSLFMDMPM APKVRNMLSF SVLTPYYTEE
1101: VLFSLRDLET PNEDGVSILF YLQKIFPDEW NNFLERVKCL SEEELKESDE LEEELRLWAS YRGQTLTRTV RGMMYYRKAL ELQAFLDMAM HEDLMEGYKA
1201: VELNSENNSR GERSLWAQCQ AVADMKFTYV VSCQQYGIHK RSGDPRAQDI LRLMTRYPSL RVAYIDEVEE PVKDKSKKGN QKVYYSVLVK VPKSTDHSTL
1301: AQNLDQVIYR IRLPGPAILG EGKPENQNHA IIFSRGEGLQ TIDMNQDNYM EEALKMRNLL QEFLTKHDGV RHPSILGLRE HIFTGSVSSL AWFMSNQETS
1401: FVTIGQRLLA NPLRVRFHYG HPDVFDRLFH LTRGGVSKAS KVINLSEDIF AGFNSTLREG NVTHHEYIQV GKGRDVGLNQ ISMFEAKIAN GNGEQTLSRD
1501: IYRLGHRFDF FRMMSCYFTT VGFYFSTLIT VLTVYIFLYG RLYLVLSGLE QGLSTQKGIR DNTPLQIALA SQSFVQIGFL MALPMLMEIG LERGFRTALS
1601: EFVLMQLQLA PVFFTFSLGT KTHYYGRTLL HGGAKYRSTG RGFVVFHAKF ADNYRLYSRS HFVKGLEMML LLVVYQIFGS AYRGVLAYLL ITISMWFMVG
1701: TWLFAPFLFN PSGFEWQKIV DDWTDWNKWI NNIGGIGVPA EKSWESWWEE EQEHLRYSGK RGIVVEILLA LRFFIYQYGL VYHLTITEKT KNFLVYGVSW
1801: LVIFLILFVM KTVSVGRRRF SASFQLMFRL IKGLIFMTFI AIIVILITLA HMTIQDIIVC ILAFMPTGWG MLLIAQACKP VVHRAGFWGS VRTLARGYEI
1901: VMGLLLFTPV AFLAWFPFVS EFQTRMLFNQ AFSRGLQISR ILGGHRKDRS SRNKE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.