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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • mitochondrion 4
  • extracellular 1
  • plasma membrane 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, extracellular, mitochondrion, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:mitochondrion
Plant-mPloc:extracellular, mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400082011 Potato mitochondrion 99.02 99.02
VIT_06s0004g01270.t01 Wine grape cytosol, mitochondrion, nucleus, plasma membrane 87.17 86.46
KRH01816 Soybean cytosol 84.75 84.32
KRH46871 Soybean mitochondrion 84.55 84.12
Bra023386.1-P Field mustard cytosol, mitochondrion, nucleus, plasma membrane 83.88 83.67
CDX85677 Canola cytosol, mitochondrion, nucleus, plasma membrane 83.88 83.67
AT5G13000.1 Thale cress cytosol, mitochondrion, nucleus, plasma membrane 83.78 83.48
CDX91152 Canola cytosol, mitochondrion, nucleus, plasma membrane 83.68 83.42
CDX69678 Canola cytosol 83.62 83.28
CDX97217 Canola cytosol 83.62 83.28
Zm00001d018565_P002 Maize cytosol 27.67 82.92
Zm00001d014865_P001 Maize cytosol 26.08 82.6
Bra008864.1-P Field mustard cytosol, plastid 81.62 82.38
Solyc01g073750.2.1 Tomato nucleus 74.08 80.26
Os03t0128100-01 Rice cytosol, plasma membrane 25.77 80.19
GSMUA_Achr1P15040_001 Banana mitochondrion 31.11 79.63
GSMUA_Achr1P15030_001 Banana mitochondrion 47.54 77.49
Zm00001d027475_P001 Maize mitochondrion, plastid 12.22 77.02
Os02t0832500-01 Rice plasma membrane 12.27 76.85
Os06t0728800-01 Rice plasma membrane 10.88 76.81
Os03t0128200-01 Rice mitochondrion 21.15 76.44
EER90434 Sorghum plastid 77.05 76.39
Zm00001d036351_P098 Maize plastid 76.85 76.26
OQU86033 Sorghum cytosol, mitochondrion, nucleus, plasma membrane 76.28 76.13
TraesCS7B01G480300.1 Wheat plastid 76.33 75.79
TraesCS7D01G554900.1 Wheat plastid 76.44 75.74
TraesCS7A01G555700.1 Wheat plastid 76.18 75.71
TraesCS6D01G405600.1 Wheat plastid 75.67 74.86
TraesCS6B01G468200.1 Wheat golgi, unclear 75.72 74.84
TraesCS6A01G420100.1 Wheat plastid 75.51 74.48
Os02t0832400-02 Rice nucleus, peroxisome, plasma membrane, plastid 35.88 74.28
Os06t0728902-01 Rice plastid 7.29 73.96
Zm00001d027472_P002 Maize mitochondrion 73.31 73.38
OQU93328 Sorghum mitochondrion 73.51 73.29
Zm00001d018560_P002 Maize plastid 22.59 72.73
TraesCS4B01G321300.2 Wheat mitochondrion 72.28 72.35
TraesCS5A01G490800.2 Wheat mitochondrion 72.28 72.35
Zm00001d014867_P001 Maize plastid 40.81 72.27
TraesCS4D01G317900.5 Wheat mitochondrion 72.43 72.25
Zm00001d018562_P003 Maize golgi 21.0 69.32
Zm00001d014866_P002 Maize cytosol, extracellular 5.8 64.94
Solyc11g005980.1.1 Tomato cytosol, plastid 61.6 62.14
Solyc07g056260.2.1 Tomato cytosol, plastid 56.78 57.88
Solyc07g061920.2.1 Tomato cytosol 54.36 54.2
Solyc03g111570.2.1 Tomato nucleus, plastid 30.8 53.67
Solyc01g006350.2.1 Tomato endoplasmic reticulum, nucleus 30.8 53.43
Solyc07g053980.2.1 Tomato nucleus 41.32 46.13
Solyc02g078230.1.1 Tomato cytosol 41.53 45.32
Solyc03g111560.2.1 Tomato nucleus 14.73 35.04
Solyc01g006360.2.1 Tomato nucleus 13.55 34.6
Protein Annotations
KEGG:00500+2.4.1.34Gene3D:1.25.40.270MapMan:21.7.1InterPro:CALSncoils:CoilInterPro:FKS1-like_dom1
GO:GO:0000148GO:GO:0003674GO:GO:0003824GO:GO:0003843GO:GO:0005575GO:GO:0005623
GO:GO:0005886GO:GO:0005975GO:GO:0006075GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016740InterPro:Glyco_trans_48InterPro:IPR023175
UniProt:K4ASK3PFAM:PF02364PFAM:PF04652PFAM:PF14288PANTHER:PTHR12741PANTHER:PTHR12741:SF21
SMART:SM01205EnsemblPlantsGene:Solyc01g006370.2EnsemblPlants:Solyc01g006370.2.1TMHMM:TMhelixUniParc:UPI00027620BEInterPro:VPS_Vta1/CALS_N
SEG:seg:::::
Description
Callose synthase 3 [Source:Projected from Arabidopsis thaliana (AT5G13000) UniProtKB/Swiss-Prot;Acc:Q9LXT9]
Coordinates
chr1:-:983795..1005620
Molecular Weight (calculated)
225298.0 Da
IEP (calculated)
9.392
GRAVY (calculated)
-0.118
Length
1948 amino acids
Sequence
(BLAST)
0001: MASRGGPEPS LQRRITRTQT MGNIGESMID SEVVPSSLAE IAPILRVANE VEPSNPRVAY LCRFYAFEKA HRLDPTSSGR GVRQFKTSLL QRLERENDPT
0101: LIGRVKKSDA REMQSFYQHY YKKYIQALQN AAEKADRAQL TKAYQTANVL FEVLKAVNQT QAVEVDREIL EAHDKVAEKT QILVPYNILP LDPDSVNQAI
0201: MRFPEVQAAV YALRNTRGLP WPKDYKKKKD EDILDWLQAM FGFQKDSVAN QREHLILLLA NVHIRQYPKP DQQPKLDERA LNEVMKKLFK NYKKWCKYLD
0301: RKSSLWLPTI QQEVQQRKLL YMGLYLLIWG EAANLRFMPE CLCYIYHHMA FELYGMLAGN VSPMTGENVK PAYGGEEEAF LRKVVTPIYE VIAREAARSR
0401: RGKAKHSQWR NYDDLNEYFW SVDCFRLGWP MRADADFFCL PVDEEQAERN GDNKALSDRW LGKVNFVEIR SYLHIFRSFD RMWSFFILCL QAMIIIAWNG
0501: SGDLSMVFTS NVFKKVLSVF ITAAVLKLGQ ATLDVMLNWK ARRSMSFYVK LRYILKVISA AAWVIILPVT YAYTWENPPP FAQAIRNWFG SNSDSPSLFI
0601: LAVVIYLSPN MLAALLFLFP FVRRFLERSH YKIVMLMMWW SQPRLYVGRG MHESTFSLFK YTMFWVLLIA TKLAFSFYVE IKPLVEPTKK VMNVHITTYQ
0701: WHEFFPHASS NIGVVIALWA PVILVYFMDA QIWYAIFSTI FGGIYGAFRR LGEIRTLGML RSRFQSLPGA FNACLIPEEK SEQPKKKGLK ATFSRNFARV
0801: PSNKEKEAAR FAQLWNKIIT SFREEDLISN REMDLLLVPY WADRELDLVQ WPPFLLASKI PIAVDMAKDS NGKDRELKKR IEADPYMSSA VCECYASFRN
0901: VIKVLVSGRR EKEVIEYIFS EVDKHIEAGN LISEYKMSSL PSLYDLFVKL IKYLLENRQE DRDQVVLLFQ DMLEVVTRDI MMEDQLSSLV DSIHGAPGYE
1001: GMIPLDQQYQ LFASAGAIKF PPPESEAWKE KIKRLYLLLT VKESAMDVPS NLEARRRISF FSNSLFMDMP TAPKVRNMLS FSVLTPYYTE EVLFSSDDLD
1101: KQNEDGVSIL FYLQKIYPDE WNNFLERADC ISEDDLRFKW SPELEENLRH WASYRGQTLT RTVRGMMYYR RALELQSFLD MAQDDDLMEG YKAIELNDDQ
1201: MKGERSLWAQ CQAVADMKFT YVVSCQLYGI HKRSGDQRAQ DILRLMTTYP SMRVAYIDEI EEPSKDRSKK VNPKAYYSTL VKAALPNSHS TEPGQNLDQV
1301: IYRIKLPGPA ILGEGKPENQ NHAIIFTRGE GLQTIDMNQD NYMEEALKVR NLLQEFLKKH DGVRFPTILG LREHIFTGSV SSLAWFMSNQ ETSFVTIGQR
1401: LLANPLKVRF HYGHPDIFDR LFHLTRGGIS KASKIINLSE DIFAGFNSTL REGNVTHHEY IQVGKGRDVG LNQISLFEAK IANGNGEQTL SRDLYRLGHR
1501: FDYFRMLSCY FTTIGFYFST LITVLTVYVF LYGRLYLVLS GLEEGLSKEP AIKNNKPLQV ALASQSFVQI GFLMALPMMM EIGLEKGFRT ALSEFILMQL
1601: QLAPVFFTFS LGTKTHYYGR TLLHGGAKYR PTGRGFVVFH AKFADNYRFY SRSHFVKGLE LMILLLVYQI FGQENRGAVA YILITVSMWF MVGTWLFAPF
1701: LFNPSGFEWQ KIVDDWTDWN KWISNRGGIG VPPEKSWESW WEEEQEHLRH SGIRGIVAEI LLSLRFFIYQ YGLVYHLKIT VKNQSFLVYG ASWLVIILVL
1801: FVMKTISVGR RKFSANLQLV FRLIKGLIFL TFVATLVILM TLLKMTPEDM VICVLAFLPT GWGMLLIAQA LKPVVRRAGF WGSVRTLARG YEIVMGLLLF
1901: TPVAFLAWFP FVSEFQTRML FNQAFSRGLQ ISRILGGQRK DRSSRNKD
Best Arabidopsis Sequence Match ( AT5G13000.1 )
(BLAST)
0001: MSATRGGPDQ GPSQPQQRRI IRTQTAGNLG ESFDSEVVPS SLVEIAPILR VANEVESSNP RVAYLCRFYA FEKAHRLDPT SSGRGVRQFK TALLQRLERE
0101: HDPTLMGRVK KSDAREMQSF YQHYYKKYIQ ALHNAADKAD RAQLTKAYQT ANVLFEVLKA VNLTQSIEVD REILEAQDKV AEKTQLYVPY NILPLDPDSA
0201: NQAIMRYPEI QAAVLALRNT RGLPWPEGHK KKKDEDMLDW LQEMFGFQKD NVANQREHLI LLLANVHIRQ FPKPDQQPKL DDQALTEVMK KLFKNYKKWC
0301: KYLGRKSSLW LPTIQQEMQQ RKLLYMALYL LIWGEAANLR FMPECLCYIY HHMAFELYGM LAGNVSPMTG ENVKPAYGGE EDAFLRKVVT PIYEVIQMEA
0401: QRSKKGKSKH SQWRNYDDLN EYFWSVDCFR LGWPMRADAD FFCLPVAVPN TEKDGDNSKP IVARDRWVGK VNFVEIRSFW HVFRSFDRMW SFYILCLQAM
0501: IIMAWDGGQP SSVFGADVFK KVLSVFITAA IMKLGQAVLD VILNFKAHQS MTLHVKLRYI LKVFSAAAWV IILPVTYAYS WKDPPAFART IKSWFGSAMH
0601: SPSLFIIAVV SYLSPNMLAG VMFLFPLLRR FLERSNYRIV MLMMWWSQPR LYVGRGMHES AFSLFKYTMF WVLLIATKLA FSYYIEIRPL VAPTQAIMKA
0701: RVTNFQWHEF FPRAKNNIGV VIALWAPIIL VYFMDSQIWY AIFSTLFGGI YGAFRRLGEI RTLGMLRSRF ESLPGAFNDR LIPDGKNQQK KKGIRATLSH
0801: NFTEDKVPVN KEKEAARFAQ LWNTIISSFR EEDLISDREM DLLLVPYWAD RDLDLIQWPP FLLASKIPIA LDMAKDSNGK DRELKKRIES DTYMKCAVRE
0901: CYASFKNIIK FVVQGNREKE VIEIIFAEVD KHIDTGDLIQ EYKMSALPSL YDHFVKLIKY LLDNKEEDRD HVVILFQDML EVVTRDIMME DYNISSLVDS
1001: SHGGTWHGGM IPLEQQYQLF ASSGAIRFPI EPVTEAWKEK IKRIYLLLTT KESAMDVPSN LEARRRISFF SNSLFMDMPM APKVRNMLSF SVLTPYYTEE
1101: VLFSLRDLET PNEDGVSILF YLQKIFPDEW NNFLERVKCL SEEELKESDE LEEELRLWAS YRGQTLTRTV RGMMYYRKAL ELQAFLDMAM HEDLMEGYKA
1201: VELNSENNSR GERSLWAQCQ AVADMKFTYV VSCQQYGIHK RSGDPRAQDI LRLMTRYPSL RVAYIDEVEE PVKDKSKKGN QKVYYSVLVK VPKSTDHSTL
1301: AQNLDQVIYR IRLPGPAILG EGKPENQNHA IIFSRGEGLQ TIDMNQDNYM EEALKMRNLL QEFLTKHDGV RHPSILGLRE HIFTGSVSSL AWFMSNQETS
1401: FVTIGQRLLA NPLRVRFHYG HPDVFDRLFH LTRGGVSKAS KVINLSEDIF AGFNSTLREG NVTHHEYIQV GKGRDVGLNQ ISMFEAKIAN GNGEQTLSRD
1501: IYRLGHRFDF FRMMSCYFTT VGFYFSTLIT VLTVYIFLYG RLYLVLSGLE QGLSTQKGIR DNTPLQIALA SQSFVQIGFL MALPMLMEIG LERGFRTALS
1601: EFVLMQLQLA PVFFTFSLGT KTHYYGRTLL HGGAKYRSTG RGFVVFHAKF ADNYRLYSRS HFVKGLEMML LLVVYQIFGS AYRGVLAYLL ITISMWFMVG
1701: TWLFAPFLFN PSGFEWQKIV DDWTDWNKWI NNIGGIGVPA EKSWESWWEE EQEHLRYSGK RGIVVEILLA LRFFIYQYGL VYHLTITEKT KNFLVYGVSW
1801: LVIFLILFVM KTVSVGRRRF SASFQLMFRL IKGLIFMTFI AIIVILITLA HMTIQDIIVC ILAFMPTGWG MLLIAQACKP VVHRAGFWGS VRTLARGYEI
1901: VMGLLLFTPV AFLAWFPFVS EFQTRMLFNQ AFSRGLQISR ILGGHRKDRS SRNKE
Arabidopsis Description
CALS3Callose synthase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXT9]
SUBAcon: [mitochondrion,plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.