Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- plasma membrane 4
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
26371478
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039392 | Potato | plasma membrane | 99.11 | 93.9 |
| Os06t0112800-01 | Rice | plasma membrane | 28.0 | 80.67 |
| GSMUA_Achr2P04760_001 | Banana | plasma membrane | 80.77 | 77.38 |
| Solyc01g006350.2.1 | Tomato | endoplasmic reticulum, nucleus | 69.41 | 69.1 |
| KRH63708 | Soybean | endoplasmic reticulum | 85.42 | 60.03 |
| KRH54243 | Soybean | endoplasmic reticulum | 84.88 | 59.05 |
| VIT_17s0000g10010.t01 | Wine grape | cytosol | 85.33 | 58.14 |
| CDY33198 | Canola | cytosol, mitochondrion | 81.48 | 48.15 |
| AT2G36850.1 | Thale cress | mitochondrion | 81.75 | 48.0 |
| CDX75010 | Canola | cytosol, mitochondrion | 81.4 | 47.67 |
| Bra005239.1-P | Field mustard | cytosol, mitochondrion | 81.31 | 47.62 |
| HORVU7Hr1G003460.9 | Barley | plastid | 79.43 | 46.54 |
| Zm00001d030266_P001 | Maize | cytosol | 79.79 | 46.51 |
| TraesCS4A01G459300.1 | Wheat | golgi | 79.25 | 46.29 |
| TraesCS7D01G026700.1 | Wheat | mitochondrion | 78.98 | 46.09 |
| TraesCS7A01G030500.1 | Wheat | golgi | 78.98 | 46.09 |
| Solyc07g053980.2.1 | Tomato | nucleus | 51.7 | 33.12 |
| Solyc11g005980.1.1 | Tomato | cytosol, plastid | 55.28 | 32.0 |
| Solyc02g078230.1.1 | Tomato | cytosol | 50.54 | 31.65 |
| Solyc01g006370.2.1 | Tomato | nucleus | 53.67 | 30.8 |
| Solyc07g056260.2.1 | Tomato | cytosol, plastid | 51.7 | 30.25 |
| Solyc01g073750.2.1 | Tomato | nucleus | 46.33 | 28.81 |
| Solyc07g061920.2.1 | Tomato | cytosol | 48.12 | 27.53 |
| GSMUA_Achr2P04770_001 | Banana | mitochondrion, plasma membrane | 1.61 | 2.19 |
| Solyc01g006360.2.1 | Tomato | nucleus | 1.25 | 1.83 |
| Solyc03g111560.2.1 | Tomato | nucleus | 1.16 | 1.59 |
| Os06t0113150-00 | Rice | mitochondrion | 0.45 | 1.02 |
| Zm00001d035842_P001 | Maize | cytosol | 0.18 | 0.35 |
| KRH63709 | Soybean | cytosol | 0.0 | 0.0 |
| VIT_17s0000g10020.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| KEGG:00500+2.4.1.34 | MapMan:21.7.1 | GO:GO:0000148 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003843 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005975 | GO:GO:0006075 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 |
| InterPro:Glyco_trans_48 | UniProt:K4BK20 | PFAM:PF02364 | PANTHER:PTHR12741 | PANTHER:PTHR12741:SF43 | EnsemblPlantsGene:Solyc03g111570.2 |
| EnsemblPlants:Solyc03g111570.2.1 | TMHMM:TMhelix | UniParc:UPI0002768F10 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3:+:62185065..62210136
Molecular Weight (calculated)
127535.0 Da
IEP (calculated)
7.784
GRAVY (calculated)
0.013
Length
1118 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGTSPENNKA YAALFSPFWN EIIKSLREED YVSNREMDLL SMPSNTGSLR LVQWPLFLLC SKILLAIDLA LDCKDTQRDL WTRICKDEYM AYAVQECYYS
0101: IEKILYSLND GEGRLWVERI YREINNSIME GSLVMTLSLK KLPVVLSRFT ALTGLLIRNE TPELSKGAAK AMYDLYDVVT HDLLSSDLRE QLDTWNILAR
0201: ARNEGRLFSR VEWPRDPEIK EQVKRLHLLL TVKDSAANIP KNLEARRRLE FFTNSLFMDM PPAKPVSEMM PFCVFTPYYS ETVLYSSSDL REENEDGIST
0301: LFYLQKIFPD EWENFLERIG RGDSGDNDIQ EGSSDALDLR FWASYRGQTL ARTVRGMMYY RRALMLQSYL ERRSLGGVDG HSHTNSLTSQ GFELSREARA
0401: QADLKFTYVI SCQIYGQQKQ RKAPEATDIG LLLRRNEALR VAFIHVEEIT GDDGKVSKEF YSKLVKADAH GKDQEIYSVK LPGDPKLGEG KPENQNHSII
0501: FTRGEAVQTI DMNQDNYLEE AMKVRNLLEE FHGKHGLRPP TILGVREHVF TGSVSSLAWF MSNQETSFVT LGQRVLAKPL KVRMHYGHPD IFDRIFHITR
0601: GGISKASRVI NISEDIYAGF NSTLRQGNIT HHEYIQVGKG RDVGLNQIAL FEGKVAGGNG EQVLSRDVYR IGQLFDFFRM LSFFFTTVGY YVCTMMTVLT
0701: VYIFLYGRAY LAFSGLDEGI SRRARFLGNT ALNAALNAQF FVQIGIFTAV PMIMGFILEL GLLKAVFSFI TMQLQFCSVF FTFSLGTRTH YFGRTILHGG
0801: AKYRATGRGF VVRHIKFAEN YRLYSRSHFV KALEVALLLI VYLAYGYTNG STTSFILLTL SSWFLVISWL FAPYIFNPSG FEWQKTVEDF DDWTNWLMYK
0901: GGVGVKGDDS WESWWDEEQI HIQTLRGRIL ETILSLRFFL FQYGIVYKLQ LTGTDTSLAI YGFSWIVLVG VVMIFKIFTF SPKKSTNFQL MLRFIQGVTA
1001: LGLVAALCLV VALTELSVAD LFASVLAFIA TGWAVLCLAI TWKRVVWSLG LWESVKEFAR MYDAGMGIII FAPVAILSWF PFVSTFQSRI LFNQAFSRGL
1101: EISLILAGNK ANVEPSTF
0101: IEKILYSLND GEGRLWVERI YREINNSIME GSLVMTLSLK KLPVVLSRFT ALTGLLIRNE TPELSKGAAK AMYDLYDVVT HDLLSSDLRE QLDTWNILAR
0201: ARNEGRLFSR VEWPRDPEIK EQVKRLHLLL TVKDSAANIP KNLEARRRLE FFTNSLFMDM PPAKPVSEMM PFCVFTPYYS ETVLYSSSDL REENEDGIST
0301: LFYLQKIFPD EWENFLERIG RGDSGDNDIQ EGSSDALDLR FWASYRGQTL ARTVRGMMYY RRALMLQSYL ERRSLGGVDG HSHTNSLTSQ GFELSREARA
0401: QADLKFTYVI SCQIYGQQKQ RKAPEATDIG LLLRRNEALR VAFIHVEEIT GDDGKVSKEF YSKLVKADAH GKDQEIYSVK LPGDPKLGEG KPENQNHSII
0501: FTRGEAVQTI DMNQDNYLEE AMKVRNLLEE FHGKHGLRPP TILGVREHVF TGSVSSLAWF MSNQETSFVT LGQRVLAKPL KVRMHYGHPD IFDRIFHITR
0601: GGISKASRVI NISEDIYAGF NSTLRQGNIT HHEYIQVGKG RDVGLNQIAL FEGKVAGGNG EQVLSRDVYR IGQLFDFFRM LSFFFTTVGY YVCTMMTVLT
0701: VYIFLYGRAY LAFSGLDEGI SRRARFLGNT ALNAALNAQF FVQIGIFTAV PMIMGFILEL GLLKAVFSFI TMQLQFCSVF FTFSLGTRTH YFGRTILHGG
0801: AKYRATGRGF VVRHIKFAEN YRLYSRSHFV KALEVALLLI VYLAYGYTNG STTSFILLTL SSWFLVISWL FAPYIFNPSG FEWQKTVEDF DDWTNWLMYK
0901: GGVGVKGDDS WESWWDEEQI HIQTLRGRIL ETILSLRFFL FQYGIVYKLQ LTGTDTSLAI YGFSWIVLVG VVMIFKIFTF SPKKSTNFQL MLRFIQGVTA
1001: LGLVAALCLV VALTELSVAD LFASVLAFIA TGWAVLCLAI TWKRVVWSLG LWESVKEFAR MYDAGMGIII FAPVAILSWF PFVSTFQSRI LFNQAFSRGL
1101: EISLILAGNK ANVEPSTF
0001: MARVYSNWDR LVRATLRREQ LRNTGQGHER VSSGLAGAVP PSLGRATNID AILQAADEIQ SEDPSVARIL CEQAYSMAQN LDPNSDGRGV LQFKTGLMSV
0101: IKQKLAKRDG ASIDRDRDIE RLWEFYKLYK RRHRVDDIQK EEQKWRESGT TFSSNVGEIL KMRKVFATLR ALIEVLEVLS RDADPNGVGR SIRDELGRIK
0201: KADATLSAEL TPYNIVPLEA QSMTNAIGVF PEVRGAVQAI RYTEHFPRLP VDFEISGQRD ADMFDLLEYI FGFQRDNVRN QREHLVLTLS NAQSQLSIPG
0301: QNDPKIDENA VNEVFLKVLD NYIKWCKYLR IRVVYNKLEA IDRDRKLFLV SLYFLIWGEA ANVRFLPECI CYIFHNMAKE LDAKLDHGEA VRADSCLTGT
0401: DTGSVSFLER IICPIYETIS AETVRNNGGK AAHSEWRNYD DFNEYFWTPA CFELSWPMKT ESRFLSKPKG RKRTAKSSFV EHRTYLHLFR SFIRLWIFMF
0501: IMFQSLTIIA FRNEHLNIET FKILLSAGPT YAIMNFIECL LDVVLMYGAY SMARGMAISR LVIRFLWWGL GSAFVVYYYV KVLDERNKPN QNEFFFHLYI
0601: LVLGCYAAVR LIFGLLVKLP ACHALSEMSD QSFFQFFKWI YQERYFVGRG LFENLSDYCR YVAFWLVVLA SKFTFAYFLQ IKPLVKPTNT IIHLPPFQYS
0701: WHDIVSKSND HALTIVSLWA PVLAIYLMDI HIWYTLLSAI IGGVMGAKAR LGEIRTIEMV HKRFESFPEA FAQNLVSPVV KRVPLGQHAS QDGQDMNKAY
0801: AAMFSPFWNE IIKSLREEDY LSNREMDLLS IPSNTGSLRL VQWPLFLLCS KILVAIDLAM ECKETQEVLW RQICDDEYMA YAVQECYYSV EKILNSMVND
0901: EGRRWVERIF LEISNSIEQG SLAITLNLKK LQLVVSRFTA LTGLLIRNET PDLAKGAAKA MFDFYEVVTH DLLSHDLREQ LDTWNILARA RNEGRLFSRI
1001: AWPRDPEIIE QVKRLHLLLT VKDAAANVPK NLEARRRLEF FTNSLFMDMP QARPVAEMVP FSVFTPYYSE TVLYSSSELR SENEDGISIL FYLQKIFPDE
1101: WENFLERIGR SESTGDADLQ ASSTDALELR FWVSYRGQTL ARTVRGMMYY RRALMLQSFL ERRGLGVDDA SLTNMPRGFE SSIEARAQAD LKFTYVVSCQ
1201: IYGQQKQQKK PEATDIGLLL QRYEALRVAF IHSEDVGNGD GGSGGKKEFY SKLVKADIHG KDEEIYSIKL PGDPKLGEGK PENQNHAIVF TRGEAIQTID
1301: MNQDNYLEEA IKMRNLLEEF HGKHGIRRPT ILGVREHVFT GSVSSLAWFM SNQETSFVTL GQRVLAYPLK VRMHYGHPDV FDRIFHITRG GISKASRVIN
1401: ISEDIYAGFN STLRQGNITH HEYIQVGKGR DVGLNQIALF EGKVAGGNGE QVLSRDVYRI GQLFDFFRMM SFYFTTVGFY VCTMMTVLTV YVFLYGRVYL
1501: AFSGADRAIS RVAKLSGNTA LDAALNAQFL VQIGIFTAVP MVMGFILELG LLKAIFSFIT MQFQLCSVFF TFSLGTRTHY FGRTILHGGA KYRATGRGFV
1601: VQHIKFADNY RLYSRSHFVK AFEVALLLII YIAYGYTDGG ASSFVLLTIS SWFLVISWLF APYIFNPSGF EWQKTVEDFE DWVSWLMYKG GVGVKGELSW
1701: ESWWEEEQAH IQTLRGRILE TILSLRFFMF QYGIVYKLDL TRKNTSLALY GYSWVVLVVI VFLFKLFWYS PRKSSNILLA LRFLQGVASI TFIALIVVAI
1801: AMTDLSIPDM FACVLGFIPT GWALLSLAIT WKQVLRVLGL WETVREFGRI YDAAMGMLIF SPIALLSWFP FISTFQSRLL FNQAFSRGLE ISIILAGNRA
1901: NVET
0101: IKQKLAKRDG ASIDRDRDIE RLWEFYKLYK RRHRVDDIQK EEQKWRESGT TFSSNVGEIL KMRKVFATLR ALIEVLEVLS RDADPNGVGR SIRDELGRIK
0201: KADATLSAEL TPYNIVPLEA QSMTNAIGVF PEVRGAVQAI RYTEHFPRLP VDFEISGQRD ADMFDLLEYI FGFQRDNVRN QREHLVLTLS NAQSQLSIPG
0301: QNDPKIDENA VNEVFLKVLD NYIKWCKYLR IRVVYNKLEA IDRDRKLFLV SLYFLIWGEA ANVRFLPECI CYIFHNMAKE LDAKLDHGEA VRADSCLTGT
0401: DTGSVSFLER IICPIYETIS AETVRNNGGK AAHSEWRNYD DFNEYFWTPA CFELSWPMKT ESRFLSKPKG RKRTAKSSFV EHRTYLHLFR SFIRLWIFMF
0501: IMFQSLTIIA FRNEHLNIET FKILLSAGPT YAIMNFIECL LDVVLMYGAY SMARGMAISR LVIRFLWWGL GSAFVVYYYV KVLDERNKPN QNEFFFHLYI
0601: LVLGCYAAVR LIFGLLVKLP ACHALSEMSD QSFFQFFKWI YQERYFVGRG LFENLSDYCR YVAFWLVVLA SKFTFAYFLQ IKPLVKPTNT IIHLPPFQYS
0701: WHDIVSKSND HALTIVSLWA PVLAIYLMDI HIWYTLLSAI IGGVMGAKAR LGEIRTIEMV HKRFESFPEA FAQNLVSPVV KRVPLGQHAS QDGQDMNKAY
0801: AAMFSPFWNE IIKSLREEDY LSNREMDLLS IPSNTGSLRL VQWPLFLLCS KILVAIDLAM ECKETQEVLW RQICDDEYMA YAVQECYYSV EKILNSMVND
0901: EGRRWVERIF LEISNSIEQG SLAITLNLKK LQLVVSRFTA LTGLLIRNET PDLAKGAAKA MFDFYEVVTH DLLSHDLREQ LDTWNILARA RNEGRLFSRI
1001: AWPRDPEIIE QVKRLHLLLT VKDAAANVPK NLEARRRLEF FTNSLFMDMP QARPVAEMVP FSVFTPYYSE TVLYSSSELR SENEDGISIL FYLQKIFPDE
1101: WENFLERIGR SESTGDADLQ ASSTDALELR FWVSYRGQTL ARTVRGMMYY RRALMLQSFL ERRGLGVDDA SLTNMPRGFE SSIEARAQAD LKFTYVVSCQ
1201: IYGQQKQQKK PEATDIGLLL QRYEALRVAF IHSEDVGNGD GGSGGKKEFY SKLVKADIHG KDEEIYSIKL PGDPKLGEGK PENQNHAIVF TRGEAIQTID
1301: MNQDNYLEEA IKMRNLLEEF HGKHGIRRPT ILGVREHVFT GSVSSLAWFM SNQETSFVTL GQRVLAYPLK VRMHYGHPDV FDRIFHITRG GISKASRVIN
1401: ISEDIYAGFN STLRQGNITH HEYIQVGKGR DVGLNQIALF EGKVAGGNGE QVLSRDVYRI GQLFDFFRMM SFYFTTVGFY VCTMMTVLTV YVFLYGRVYL
1501: AFSGADRAIS RVAKLSGNTA LDAALNAQFL VQIGIFTAVP MVMGFILELG LLKAIFSFIT MQFQLCSVFF TFSLGTRTHY FGRTILHGGA KYRATGRGFV
1601: VQHIKFADNY RLYSRSHFVK AFEVALLLII YIAYGYTDGG ASSFVLLTIS SWFLVISWLF APYIFNPSGF EWQKTVEDFE DWVSWLMYKG GVGVKGELSW
1701: ESWWEEEQAH IQTLRGRILE TILSLRFFMF QYGIVYKLDL TRKNTSLALY GYSWVVLVVI VFLFKLFWYS PRKSSNILLA LRFLQGVASI TFIALIVVAI
1801: AMTDLSIPDM FACVLGFIPT GWALLSLAIT WKQVLRVLGL WETVREFGRI YDAAMGMLIF SPIALLSWFP FISTFQSRLL FNQAFSRGLE ISIILAGNRA
1901: NVET
Arabidopsis Description
CALS10Callose synthase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJM0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.