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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • mitochondrion 4
  • extracellular 1
  • plasma membrane 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, extracellular, mitochondrion, plasma membrane, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:extracellular
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d027475_P001 Maize mitochondrion, plastid 13.01 75.73
Os03t0128200-01 Rice mitochondrion 22.41 74.77
Solyc01g006370.2.1 Tomato nucleus 80.26 74.08
Os02t0832400-02 Rice nucleus, peroxisome, plasma membrane, plastid 37.54 71.73
Os06t0728902-01 Rice plastid 7.62 71.35
Zm00001d018560_P002 Maize plastid 23.86 70.91
CDY67378 Canola cytosol 18.08 69.44
Zm00001d014867_P001 Maize plastid 42.32 69.18
OQU86033 Sorghum cytosol, mitochondrion, nucleus, plasma membrane 74.81 68.9
EER90434 Sorghum plastid 74.81 68.45
PGSC0003DMT400074555 Potato plasma membrane 17.41 68.19
Zm00001d036351_P098 Maize plastid 74.42 68.16
Zm00001d018562_P003 Maize golgi 22.36 68.14
TraesCS6D01G405600.1 Wheat plastid 74.53 68.05
TraesCS6B01G468200.1 Wheat golgi, unclear 74.53 67.99
Bra005620.1-P Field mustard cytosol 17.69 67.8
TraesCS6A01G420100.1 Wheat plastid 74.36 67.7
CDY42080 Canola cytosol 17.63 67.59
TraesCS7B01G480300.1 Wheat plastid 73.75 67.58
TraesCS7D01G554900.1 Wheat plastid 73.86 67.55
TraesCS7A01G555700.1 Wheat plastid 73.58 67.5
OQU93328 Sorghum mitochondrion 73.03 67.2
Zm00001d027472_P002 Maize mitochondrion 72.58 67.06
TraesCS4B01G321300.2 Wheat mitochondrion 71.86 66.39
TraesCS4D01G317900.5 Wheat mitochondrion 72.02 66.31
Zm00001d018565_P002 Maize cytosol 23.97 66.31
TraesCS5A01G490800.2 Wheat mitochondrion 71.75 66.29
Zm00001d014866_P002 Maize cytosol, extracellular 6.34 65.52
CDY12248 Canola cytosol 5.34 64.43
Zm00001d014865_P001 Maize cytosol 21.69 63.41
Os03t0128100-01 Rice cytosol, plasma membrane 21.86 62.78
Solyc11g005980.1.1 Tomato cytosol, plastid 60.51 56.34
Solyc07g056260.2.1 Tomato cytosol, plastid 57.06 53.69
KRG93040 Soybean plasma membrane 24.25 53.63
Solyc07g061920.2.1 Tomato cytosol 54.67 50.31
Solyc01g006350.2.1 Tomato endoplasmic reticulum, nucleus 29.03 46.48
Solyc03g111570.2.1 Tomato nucleus, plastid 28.81 46.33
Solyc07g053980.2.1 Tomato nucleus 42.1 43.38
Os02t0832500-01 Rice plasma membrane 7.45 43.09
Solyc02g078230.1.1 Tomato cytosol 42.71 43.03
Os06t0728800-01 Rice plasma membrane 5.56 36.23
Solyc03g111560.2.1 Tomato nucleus 15.57 34.19
Solyc01g006360.2.1 Tomato nucleus 13.96 32.9
Protein Annotations
KEGG:00500+2.4.1.34Gene3D:1.25.40.270MapMan:21.7.1InterPro:CALSInterPro:FKS1-like_dom1GO:GO:0000148
GO:GO:0003674GO:GO:0003824GO:GO:0003843GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0005975GO:GO:0006075GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0016740InterPro:Glyco_trans_48InterPro:IPR023175UniProt:K4AXC1
PFAM:PF02364PFAM:PF04652PFAM:PF14288PANTHER:PTHR12741PANTHER:PTHR12741:SF21SMART:SM01205
EnsemblPlantsGene:Solyc01g073750.2EnsemblPlants:Solyc01g073750.2.1TMHMM:TMhelixUniParc:UPI0002761932InterPro:VPS_Vta1/CALS_NSEG:seg
Description
No Description!
Coordinates
chr1:+:81118565..81146307
Molecular Weight (calculated)
207751.0 Da
IEP (calculated)
9.149
GRAVY (calculated)
-0.157
Length
1798 amino acids
Sequence
(BLAST)
0001: MAYQRKGSDL QPQRRILRTQ TAGNLGESMM DSEVVPSSLS EIAPILRVAN EVEPSNPRVA YLCRFYAFEK AHRLDPTSSG RGVRQFKTSL LQRLEKENET
0101: TLAGRTKSDA REMQSFYQHY YRKYIQALQN AADKADRARL TKAYQTAAVL FEVLKAVNLT EAVEVSDEIL EAHTKVAEKT EILVPYNILP LDPDSSNQAI
0201: MRYPEIQATV TALRNTRGLP WPKNHKKKVD EDILDWLQAM FGFQKDNVAN QREHLILLLA NVHIRQFPKL DQQPKLDDLA LTDVMKKLFK NYKKWCKYLG
0301: RKSSLWLPTI QQEVQQRKLL YMGLYLLIWG EAANLRFMPE CLCYIYHHMA FELYGMLAGS VSPMTGETIK PAYGGSDEAF LRKVVTPIYN TIAKEAKRSK
0401: EKSKHSQWRN YDDLNEYFWS VNCFRLGWPM RADADFFHLP PEEQRADANE AIKRNHWMGK INFVETRSFW HIFRSFDRMW GFFILCLQAM IIIAWNGSGN
0501: LGSIFEGDVF KSVMSIFITA AILKLAQAVL DIIMSWKSRH SMSFYVKLRY VFKAVAAAAW VVVLPVTYAY SWKNPPEFAQ TIKNWFGNGS SSPSLFIIAV
0601: LFYLSPNMLS ALLFVFPFIR RFLERSDYKI VSLVMWWSQP RLYVGRGMHE DAFSLFKYTL LWVLLLAAKL AFSFYVEIQP LVGPTKDIMR VRIGVYKWHE
0701: FFPRAKNNIG VVIALWAPVI LVYFMDTQIW YAIFSTIFGG IYGAFRRLGE IRTLGMLRSR FQSLPGAFNA CLIPVEKDEK RKKGLKATLS KKFDEVTSSR
0801: GKEAARFAQM WNKIIESFRE EDLINNRERN LLLVPYWADP DLDLIQWPPF LLASKLPIAL DMAKDCNGRD RELNKRLNAD SYMHSAIREC YASCKSIINV
0901: LVLGEREQLV IQEIFSKVDE HIADGNLIKE FNMSALPTLY EQFVRLIDFL KENKKEDKDH VVILLLDMLE VVTRDIMEDS VPSLLDSTHG GSYGMHDGMI
1001: PNAKYQLFGT LNFPVTETEA WKEKIRRLHM LLTDKESAMD VPTNLEARRR ISFFSNSLFM DMPHAPKVRN MLSFSILTPY FNEEVLFSIN SLERPNEDGV
1101: SILFYLQKIY PDEWENFLER VDCLTEDGLR GNTRLEEELR LWASYRGQTL TKTVRGMMYY RQALELQAFL DMAKDEELMK GYKAAESNTD EQPKNERSLM
1201: SQCQAVADMK FTYVVSCQQY GVQKRSADHR AQDILRLMTK YPSLRVAYID EIDETGKDKS NRTGDNKVYY SALVKAVPRS VDSAEPDQKL DQVIYRIKLP
1301: GPAILGEGKP ENQNHAIIFT RGEGLQTIDM NQDNYMEEAL KMRNLLQEFL KKNGVRNPTI LGLREHIFTG SVSSLAWFMS NQETSFVTIG QRLLANPLKV
1401: RFHYGHPDVF DRLFHLTRGG VSKASKVINL SEDIFAGFNS TLRGGNVTHH EYIQVGKGRD VGLNQISLFE AKIANGNGEQ TMSRDVYRLG HRFDFFRMLS
1501: CFFTTIGFYF TTLITVIIVY VFLYGRLYLV VSGLEEGLSS HPAIRNNKPL QVALASQSFV QIGLLMALPM MMEIGLERGF RNALTDFVLM QLQLAPVFFT
1601: FSLGTRTHYY GRTLLHGGAQ YRGTGRGFVV FHAKFAENYR LYSRSHFVKG IELMILLLVY HIFGRSYRDM VAYVLITASI WFLVVTWLFA PFLFNPSGFE
1701: WQKIVDDWTD WNKWINNRGG IGVSPEKSWE SWWEKEHEHL YHSGLRGTVV EILLSLRFFI YQYGLVYHLT ILNNETSFLV YGVSWIVIFV ILAVMKEI
Best Arabidopsis Sequence Match ( AT2G31960.1 )
(BLAST)
0001: MAQRKGPDPP PPQRRILRTQ TAGNLGEAML DSEVVPSSLV EIAPILRVAN EVEASNPRVA YLCRFYAFEK AHRLDPTSSG RGVRQFKTAL LQRLERENET
0101: TLAGRQKSDA REMQSFYQHY YKKYIQALQN AADKADRAQL TKAYQTAAVL FEVLKAVNQT EDVEVADEIL EAHTKVEEKS QIYVPYNILP LDPDSQNQAI
0201: MRFPEIQATV SALRNTRGLP WPAGHKKKLD EDMLDWLQTM FGFQKDNVSN QREHLILLLA NVHIRQFPRP EQQPRLDDRA LTIVMKKLFK NYKKWCKYLG
0301: RKSSLWLPTI QQEVQQRKLL YMGLYLLIWG EAANLRFLPE CLCYIYHHMA FELYGMLAGS VSPMTGEHVK PAYGGEDEAF LQKVVTPIYK TIAKEAKRSR
0401: GGKSKHSEWR NYDDLNEYFW SIRCFRLGWP MRADADFFCQ TAEELRLDRS ENKPKTGDRW MGKVNFVEIR SFWHIFRSFD RMWSFYILSL QAMIIIAWNG
0501: SGKLSGIFQG DVFLKVLSIF ITAAILKLAQ AVLDIALSWK SRHSMSFHVK LRFIFKAVAA AIWVVLMPLT YAYSWKTPSG FAETIKNWFG GHQNSSPSFF
0601: IIVILIYLSP NMLSTLLFAF PFIRRYLERS DYKIVMLMMW WSQPRLYIGR GMHESALSLF KYTMFWVVLL ISKLAFSFYA EIKPLVKPTK DIMRVHISVY
0701: RWHEFFPHAK SNMGVVIALW SPVILVYFMD TQIWYAIVST LVGGLNGAFR RLGEIRTLGM LRSRFQSLPE AFNACLVPNE KSETPKKKGI MATFTRKFDQ
0801: VPSSKDKEAA RFAQMWNKII SSFREEDLIS DREMELLLVP YWADRDLDLI RWPPFLLASK IPIALDMAKD SNGKDRELTK RLSVDSYMTC AVRECYASFK
0901: NLINFLVVGE REGQVINEIF SRIDEHIEKE TLIKDLNLSA LPDLYGQFVR LIEYLMENRE EDKDQIVIVL LNMLEVVTRD IMDEEVPSML ESTHNGTYVK
1001: YDVMTPLHQQ RKYFSQLRFP VYSQTEAWKE KIKRLHLLLT VKESAMDVPS NLEARRRLTF FSNSLFMEMP DAPKIRNMLS FSVLTPYYSE DVLFSIFGLE
1101: KQNEDGVSIL FYLQKIFPDE WTNFLERVKC GSEEELRARE ELEEELRLWA SYRGQTLTKT VRGMMYYRKA LELQAFLDMA KDEELMKGYK ALELTSEDAS
1201: KSGTSLWAQC QALADMKFTF VVSCQQYSVQ KRSGDQRAKD ILRLMTTYPS LRVAYIDEVE QTHKESYKGA DEKIYYSALV KAAPQTKSMD SSESVQTLDQ
1301: VIYRIKLPGP AILGEGKPEN QNHSIIFTRG EGLQTIDMNQ DNYMEEAFKM RNLLQEFLVK HGGVRTPTIL GLREHIFTGS VSSLAWFMSN QENSFVTIGQ
1401: RVLASPLKVR FHYGHPDVFD RLFHLTRGGV CKASKVINLS EDIFAGFNST LREGNVTHHE YIQVGKGRDV GLNQISMFEA KIANGNGEQT LSRDLYRLGH
1501: RFDFFRMLSC YFTTIGFYFS TMLTVLTVYV FLYGRLYLVL SGLEEGLSNQ KAFRSNMPLQ AALASQSFVQ IGFLMALPMM MEIGLERGFH NALIDFVLMQ
1601: LQLASVFFTF QLGTKTHYYG RTLFHGGAEY RGTGRGFVVF HAKFAENYRF YSRSHFVKGI ELMILLLVYQ IFGHAYRGVV TYILITVSIW FMVVTWLFAP
1701: FLFNPSGFEW QKIVDDWTDW NKWIYNRGGI GVPPEKSWES WWEKEIGHLR HSGKRGIILE IVLALRFFIF QYGLVYQLST FKQENQSLWI YGASWFVILF
1801: ILLIVKGLGV GRQRFSTNFQ LLFRIIKGFV FLTFLGLLIT FLALRFLTPK DIFLCMLAFM PTGWGMLLIA QACKPLIQRL GFWSSVRTLA RGYEILMGLL
1901: LFTPVAFLAW FPFVSEFQTR MLFNQAFSRG LQISRILGGQ RKDRSSKNKE
Arabidopsis Description
CALS2Callose synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL03]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.