Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07152 | Canola | cytosol | 91.8 | 84.21 |
| Bra037405.1-P | Field mustard | cytosol | 90.98 | 82.22 |
| AT2G46690.1 | Thale cress | cytosol | 59.84 | 60.33 |
| AT3G61900.1 | Thale cress | cytosol | 51.64 | 46.32 |
| AT5G53590.1 | Thale cress | cytosol | 46.72 | 40.14 |
| AT4G12410.1 | Thale cress | mitochondrion | 34.43 | 26.75 |
| AT4G22620.1 | Thale cress | mitochondrion | 34.43 | 26.25 |
| AT2G45210.1 | Thale cress | mitochondrion | 34.43 | 25.93 |
| AT3G60690.1 | Thale cress | mitochondrion | 34.43 | 24.71 |
Protein Annotations
| MapMan:35.1 | EntrezGene:827989 | ProteinID:AAB62852.1 | ProteinID:AEE81949.1 | ArrayExpress:AT4G00880 | EnsemblPlantsGene:AT4G00880 |
| RefSeq:AT4G00880 | TAIR:AT4G00880 | RefSeq:AT4G00880-TAIR-G | EnsemblPlants:AT4G00880.1 | TAIR:AT4G00880.1 | EMBL:AY063950 |
| EMBL:AY096716 | Unigene:At.27133 | ProteinID:CAB80897.1 | GO:GO:0003674 | GO:GO:0008150 | GO:GO:0009719 |
| GO:GO:0009733 | RefSeq:NP_567196.1 | UniProt:O23089 | PFAM:PF02519 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF29 | InterPro:SAUR_fam |
| UniParc:UPI00000A4B7A | SEG:seg | : | : | : | : |
Description
AT4g00880 protein [Source:UniProtKB/TrEMBL;Acc:O23089]
Coordinates
chr4:-:366373..367274
Molecular Weight (calculated)
14387.2 Da
IEP (calculated)
7.113
GRAVY (calculated)
-0.577
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNGDKVMSH WSFHIPRLHH HEHDHEKVPK GCLAVKVGQG EEQERFVIPV MYFNHPLFGQ LLKEAEEEFG FAQKGTITIP CHVEEFRYVQ GLIDRENTRF
101: LGTNLLDHHH HHHNHLIRCF RV
101: LGTNLLDHHH HHHNHLIRCF RV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.