Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037405.1-P | Field mustard | cytosol | 99.25 | 97.78 |
| AT4G00880.1 | Thale cress | cytosol | 84.21 | 91.8 |
| CDX76596 | Canola | nucleus | 51.88 | 57.98 |
| CDY48020 | Canola | cytosol | 27.82 | 57.81 |
| CDY11381 | Canola | cytosol | 51.13 | 57.14 |
| CDY41548 | Canola | cytosol | 51.88 | 56.56 |
| CDX80039 | Canola | cytosol | 51.13 | 55.74 |
| CDY47081 | Canola | cytosol | 30.83 | 47.67 |
| CDY53473 | Canola | extracellular | 42.11 | 47.46 |
| CDY28827 | Canola | cytosol | 41.35 | 42.97 |
| CDY51792 | Canola | cytosol | 40.6 | 42.19 |
| CDY65616 | Canola | cytosol | 27.07 | 41.86 |
| CDY20244 | Canola | cytosol | 41.35 | 41.04 |
| CDY14366 | Canola | cytosol | 39.85 | 35.33 |
| CDY71452 | Canola | mitochondrion | 33.08 | 27.67 |
| CDX76364 | Canola | mitochondrion | 32.33 | 27.04 |
| CDX98761 | Canola | mitochondrion | 30.83 | 26.97 |
| CDX79167 | Canola | mitochondrion | 32.33 | 26.88 |
| CDX95640 | Canola | mitochondrion | 32.33 | 26.71 |
| CDX95639 | Canola | mitochondrion | 32.33 | 26.71 |
| CDX83393 | Canola | mitochondrion | 32.33 | 26.71 |
| CDX94106 | Canola | mitochondrion | 30.08 | 26.32 |
| CDY52310 | Canola | mitochondrion | 30.83 | 25.62 |
| CDX86707 | Canola | mitochondrion | 30.83 | 25.62 |
| CDX71789 | Canola | mitochondrion | 32.33 | 25.29 |
| CDY41147 | Canola | mitochondrion | 32.33 | 25.29 |
| CDX90829 | Canola | mitochondrion | 30.83 | 24.85 |
| CDY21268 | Canola | mitochondrion | 30.83 | 24.85 |
| CDX89069 | Canola | mitochondrion | 31.58 | 24.71 |
| CDY48371 | Canola | mitochondrion | 31.58 | 24.71 |
| CDX89071 | Canola | mitochondrion | 31.58 | 24.71 |
| CDX97341 | Canola | mitochondrion | 27.07 | 24.66 |
Protein Annotations
| EnsemblPlants:CDY07152 | EnsemblPlantsGene:GSBRNA2T00123506001 | GO:A0A078F207 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 |
| InterPro:SAUR_fam | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF29 | PFAM:PF02519 | ProteinID:CDY07152 | ProteinID:CDY07152.1 |
| SEG:seg | UniParc:UPI0004EB415A | MapMan:35.1 | : | : | : |
Description
BnaCnng01670D
Coordinates
chrLK031975:-:538406..538994
Molecular Weight (calculated)
15730.6 Da
IEP (calculated)
7.625
GRAVY (calculated)
-0.741
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNGDKLISH WSFHIPRLHY HHNHNHHEHD HEKVPKGCLA VKVGQGEEQE RFVIPVWYFN HPLFGQLLKE AEEEFGFAQK GTITIPCHVE EFRYVRGLID
101: RENSKFLGAY NTLGHHHHHH PHPHNHLIRC FKV
101: RENSKFLGAY NTLGHHHHHH PHPHNHLIRC FKV
001: MGNGDKVMSH WSFHIPRLHH HEHDHEKVPK GCLAVKVGQG EEQERFVIPV MYFNHPLFGQ LLKEAEEEFG FAQKGTITIP CHVEEFRYVQ GLIDRENTRF
101: LGTNLLDHHH HHHNHLIRCF RV
101: LGTNLLDHHH HHHNHLIRCF RV
Arabidopsis Description
AT4g00880 protein [Source:UniProtKB/TrEMBL;Acc:O23089]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.