Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- golgi 3
- plasma membrane 3
- endoplasmic reticulum 3
- vacuole 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53473 | Canola | extracellular | 94.19 | 68.64 |
| CDY51792 | Canola | cytosol | 87.21 | 58.59 |
| CDY28827 | Canola | cytosol | 87.21 | 58.59 |
| CDY20244 | Canola | cytosol | 88.37 | 56.72 |
| AT5G53590.1 | Thale cress | cytosol | 83.72 | 50.7 |
| CDY48020 | Canola | cytosol | 36.05 | 48.44 |
| CDY14366 | Canola | cytosol | 76.74 | 44.0 |
| TraesCS1B01G201800.1 | Wheat | cytosol | 50.0 | 40.19 |
| Os10t0510500-01 | Rice | cytosol | 52.33 | 36.0 |
| HORVU1Hr1G047390.1 | Barley | cytosol | 50.0 | 35.83 |
| TraesCS1D01G177000.1 | Wheat | cytosol | 50.0 | 35.54 |
| CDY65616 | Canola | cytosol | 34.88 | 34.88 |
| TraesCS1A01G178700.1 | Wheat | mitochondrion | 48.84 | 34.71 |
| CDX76596 | Canola | nucleus | 47.67 | 34.45 |
| CDX80039 | Canola | cytosol | 48.84 | 34.43 |
| EER91385 | Sorghum | cytosol, mitochondrion, plastid | 53.49 | 33.82 |
| CDY41548 | Canola | cytosol | 47.67 | 33.61 |
| Zm00001d013869_P001 | Maize | cytosol | 50.0 | 33.08 |
| CDY11381 | Canola | cytosol | 45.35 | 32.77 |
| Zm00001d032475_P001 | Maize | cytosol | 47.67 | 31.78 |
| CDY07152 | Canola | cytosol | 47.67 | 30.83 |
| HORVU1Hr1G072420.1 | Barley | cytosol | 29.07 | 29.41 |
| CDX98761 | Canola | mitochondrion | 34.88 | 19.74 |
| CDX94106 | Canola | mitochondrion | 34.88 | 19.74 |
| CDX97341 | Canola | mitochondrion | 32.56 | 19.18 |
| CDY71452 | Canola | mitochondrion | 34.88 | 18.87 |
| CDX76364 | Canola | mitochondrion | 34.88 | 18.87 |
| CDX71789 | Canola | mitochondrion | 37.21 | 18.82 |
| CDY48371 | Canola | mitochondrion | 37.21 | 18.82 |
| CDY41147 | Canola | mitochondrion | 37.21 | 18.82 |
| CDX89071 | Canola | mitochondrion | 37.21 | 18.82 |
| CDX89069 | Canola | mitochondrion | 37.21 | 18.82 |
| CDY52310 | Canola | mitochondrion | 34.88 | 18.75 |
| CDX86707 | Canola | mitochondrion | 34.88 | 18.75 |
| CDX79167 | Canola | mitochondrion | 34.88 | 18.75 |
| CDY21268 | Canola | mitochondrion | 34.88 | 18.18 |
| CDX90829 | Canola | mitochondrion | 34.88 | 18.18 |
| CDX95640 | Canola | mitochondrion | 33.72 | 18.01 |
| CDX95639 | Canola | mitochondrion | 33.72 | 18.01 |
| CDX83393 | Canola | mitochondrion | 33.72 | 18.01 |
Protein Annotations
| EnsemblPlants:CDY47081 | EnsemblPlantsGene:GSBRNA2T00086704001 | GO:A0A078IB75 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 |
| InterPro:SAUR_fam | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF29 | PFAM:PF02519 | ProteinID:CDY47081 | ProteinID:CDY47081.1 |
| SEG:seg | UniParc:UPI0004EDC7FA | UniProt:A0A078IB75 | MapMan:35.2 | : | : |
Description
BnaA03g12170DBnaA03g12170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IB75]
Coordinates
chrLK032696:+:163806..164066
Molecular Weight (calculated)
10074.8 Da
IEP (calculated)
6.645
GRAVY (calculated)
-0.720
Length
86 amino acids
Sequence
(BLAST)
(BLAST)
1: MVGREGDEEG FHRFVVPLMF LSHPLFASLL NEAEEEYGFK HAGPITIPCR VDEFKHVQEI IDQETHRRHS HGNGHNHHHN NHLRCF
001: MGFEENQKQS PKQSPNHIKH MVFKFHFHVP HLHILPHHHH HHHHDVPKGC VAIMVGHEDD EEGLHRFVVP LVFLSHPLFL DLLKEAEKEY GFKHDGPITI
101: PCGVDEFKHV QEVIDEETHR RHSHGGHGHN NHNHHNNHLR CF
101: PCGVDEFKHV QEVIDEETHR RHSHGGHGHN NHNHHNNHLR CF
Arabidopsis Description
At5g53590 [Source:UniProtKB/TrEMBL;Acc:Q6NPG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.