CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47081	Canola	cytosol	56.72	88.37
CDY53473	Canola	extracellular	77.61	88.14
CDY28827	Canola	cytosol	79.85	83.59
CDY51792	Canola	cytosol	79.85	83.59
AT5G53590.1	Thale cress	cytosol	81.34	76.76
Bra003044.1-P	Field mustard	cytosol	83.58	74.67
CDY14366	Canola	cytosol	83.58	74.67
CDY48020	Canola	cytosol	22.39	46.88
TraesCS1B01G201800.1	Wheat	cytosol	35.82	44.86
CDX76596	Canola	nucleus	39.55	44.54
CDY11381	Canola	cytosol	38.06	42.86
CDX80039	Canola	cytosol	38.81	42.62
CDY41548	Canola	cytosol	38.06	41.8
HORVU1Hr1G047390.1	Barley	cytosol	37.31	41.67
Os10t0510500-01	Rice	cytosol	38.81	41.6
CDY07152	Canola	cytosol	41.04	41.35
TraesCS1D01G177000.1	Wheat	cytosol	37.31	41.32
CDY65616	Canola	cytosol	26.12	40.7
TraesCS1A01G178700.1	Wheat	mitochondrion	35.82	39.67
Zm00001d013869_P001	Maize	cytosol	38.06	39.23
EER91385	Sorghum	cytosol, mitochondrion, plastid	39.55	38.97
Zm00001d032475_P001	Maize	cytosol	35.07	36.43
HORVU1Hr1G072420.1	Barley	cytosol	18.66	29.41
CDX98761	Canola	mitochondrion	26.87	23.68
CDY71452	Canola	mitochondrion	27.61	23.27
CDX94106	Canola	mitochondrion	26.12	23.03
CDX76364	Canola	mitochondrion	26.87	22.64
CDX97341	Canola	mitochondrion	24.63	22.6
CDX79167	Canola	mitochondrion	26.87	22.5
CDY52310	Canola	mitochondrion	26.87	22.5
CDX86707	Canola	mitochondrion	26.87	22.5
CDX95640	Canola	mitochondrion	26.87	22.36
CDX95639	Canola	mitochondrion	26.87	22.36
CDX83393	Canola	mitochondrion	26.87	22.36
CDY21268	Canola	mitochondrion	26.87	21.82
CDX90829	Canola	mitochondrion	26.87	21.82
CDY41147	Canola	mitochondrion	27.61	21.76
CDX71789	Canola	mitochondrion	27.61	21.76
CDX89069	Canola	mitochondrion	26.87	21.18
CDX89071	Canola	mitochondrion	26.87	21.18
CDY48371	Canola	mitochondrion	26.87	21.18

Protein Annotations

EnsemblPlants:CDY20244	EnsemblPlantsGene:GSBRNA2T00010189001	GO:A0A078G4C7	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF29	PFAM:PF02519	ProteinID:CDY20244	ProteinID:CDY20244.1
SEG:seg	UniParc:UPI0004EDC231	UniProt:A0A078G4C7	MapMan:35.1	:	:

Description

BnaC09g29950DBnaC09g29950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4C7]

Coordinates

chrLK032104:-:608654..609570

Molecular Weight (calculated)

15894.9 Da

IEP (calculated)

7.066

GRAVY (calculated)

-0.740

Length

134 amino acids

Sequence
(BLAST)

001: MGFEDQEEQK QSPKQSQSQM VFKFHFYVPH LHIHHHHNHH HVPKGCVAIM VGHEGDEEGL HRFVVPLMFL SHPLFLSLLK EAEEKYGFKH AGPITIPCRV
101: DEFKHVQEII DEETHRRHSH GHNYHHHHNH LPCF

Best Arabidopsis Sequence Match ( AT5G53590.1 )
(BLAST)

001: MGFEENQKQS PKQSPNHIKH MVFKFHFHVP HLHILPHHHH HHHHDVPKGC VAIMVGHEDD EEGLHRFVVP LVFLSHPLFL DLLKEAEKEY GFKHDGPITI
101: PCGVDEFKHV QEVIDEETHR RHSHGGHGHN NHNHHNNHLR CF

Arabidopsis Description

At5g53590 [Source:UniProtKB/TrEMBL;Acc:Q6NPG2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.