Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53473 | Canola | extracellular | 71.13 | 85.59 |
| CDY28827 | Canola | cytosol | 76.76 | 85.16 |
| CDY51792 | Canola | cytosol | 76.06 | 84.38 |
| Bra022663.1-P | Field mustard | cytosol | 76.06 | 84.38 |
| CDY47081 | Canola | cytosol | 50.7 | 83.72 |
| CDY20244 | Canola | cytosol | 76.76 | 81.34 |
| Bra003044.1-P | Field mustard | cytosol | 69.72 | 66.0 |
| CDY14366 | Canola | cytosol | 69.72 | 66.0 |
| AT4G00880.1 | Thale cress | cytosol | 40.14 | 46.72 |
| TraesCS1B01G201800.1 | Wheat | cytosol | 32.39 | 42.99 |
| AT2G46690.1 | Thale cress | cytosol | 36.62 | 42.98 |
| Os10t0510500-01 | Rice | cytosol | 35.92 | 40.8 |
| HORVU1Hr1G047390.1 | Barley | cytosol | 33.8 | 40.0 |
| TraesCS1D01G177000.1 | Wheat | cytosol | 33.8 | 39.67 |
| Zm00001d013869_P001 | Maize | cytosol | 35.92 | 39.23 |
| EER91385 | Sorghum | cytosol, mitochondrion, plastid | 36.62 | 38.24 |
| TraesCS1A01G178700.1 | Wheat | mitochondrion | 32.39 | 38.02 |
| Zm00001d032475_P001 | Maize | cytosol | 33.1 | 36.43 |
| AT3G61900.1 | Thale cress | cytosol | 31.69 | 33.09 |
| HORVU1Hr1G072420.1 | Barley | cytosol | 17.61 | 29.41 |
| AT2G45210.1 | Thale cress | mitochondrion | 30.28 | 26.54 |
| AT4G12410.1 | Thale cress | mitochondrion | 23.94 | 21.66 |
| AT4G22620.1 | Thale cress | mitochondrion | 23.94 | 21.25 |
| AT3G60690.1 | Thale cress | mitochondrion | 25.35 | 21.18 |
Protein Annotations
| MapMan:35.1 | EntrezGene:835441 | UniProt:A0A178UGY9 | ProteinID:AED96382.1 | ArrayExpress:AT5G53590 | EnsemblPlantsGene:AT5G53590 |
| RefSeq:AT5G53590 | TAIR:AT5G53590 | RefSeq:AT5G53590-TAIR-G | EnsemblPlants:AT5G53590.1 | TAIR:AT5G53590.1 | Unigene:At.29547 |
| EMBL:BT010673 | EMBL:BT010962 | GO:GO:0003674 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 |
| RefSeq:NP_200171.2 | ProteinID:OAO92965.1 | PFAM:PF02519 | PO:PO:0025195 | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF29 |
| UniProt:Q6NPG2 | InterPro:SAUR_fam | UniParc:UPI0000220048 | SEG:seg | : | : |
Description
At5g53590 [Source:UniProtKB/TrEMBL;Acc:Q6NPG2]
Coordinates
chr5:+:21771811..21772794
Molecular Weight (calculated)
16679.7 Da
IEP (calculated)
7.054
GRAVY (calculated)
-0.817
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFEENQKQS PKQSPNHIKH MVFKFHFHVP HLHILPHHHH HHHHDVPKGC VAIMVGHEDD EEGLHRFVVP LVFLSHPLFL DLLKEAEKEY GFKHDGPITI
101: PCGVDEFKHV QEVIDEETHR RHSHGGHGHN NHNHHNNHLR CF
101: PCGVDEFKHV QEVIDEETHR RHSHGGHGHN NHNHHNNHLR CF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.