Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022663.1-P | Field mustard | cytosol | 98.44 | 98.44 |
| CDY28827 | Canola | cytosol | 96.88 | 96.88 |
| CDY53473 | Canola | extracellular | 81.25 | 88.14 |
| CDY47081 | Canola | cytosol | 58.59 | 87.21 |
| CDY20244 | Canola | cytosol | 83.59 | 79.85 |
| AT5G53590.1 | Thale cress | cytosol | 84.38 | 76.06 |
| CDY14366 | Canola | cytosol | 75.0 | 64.0 |
| CDY48020 | Canola | cytosol | 23.44 | 46.88 |
| TraesCS1B01G201800.1 | Wheat | cytosol | 38.28 | 45.79 |
| CDX76596 | Canola | nucleus | 42.19 | 45.38 |
| CDX80039 | Canola | cytosol | 41.41 | 43.44 |
| CDY11381 | Canola | cytosol | 39.84 | 42.86 |
| CDY41548 | Canola | cytosol | 40.62 | 42.62 |
| HORVU1Hr1G047390.1 | Barley | cytosol | 39.84 | 42.5 |
| Os10t0510500-01 | Rice | cytosol | 41.41 | 42.4 |
| TraesCS1D01G177000.1 | Wheat | cytosol | 39.84 | 42.15 |
| Zm00001d013869_P001 | Maize | cytosol | 41.41 | 40.77 |
| CDY07152 | Canola | cytosol | 42.19 | 40.6 |
| TraesCS1A01G178700.1 | Wheat | mitochondrion | 38.28 | 40.5 |
| EER91385 | Sorghum | cytosol, mitochondrion, plastid | 42.97 | 40.44 |
| CDY65616 | Canola | cytosol | 26.56 | 39.53 |
| Zm00001d032475_P001 | Maize | cytosol | 37.5 | 37.21 |
| HORVU1Hr1G072420.1 | Barley | cytosol | 20.31 | 30.59 |
| CDX98761 | Canola | mitochondrion | 27.34 | 23.03 |
| CDY71452 | Canola | mitochondrion | 28.12 | 22.64 |
| CDX94106 | Canola | mitochondrion | 26.56 | 22.37 |
| CDX76364 | Canola | mitochondrion | 27.34 | 22.01 |
| CDX97341 | Canola | mitochondrion | 25.0 | 21.92 |
| CDX79167 | Canola | mitochondrion | 27.34 | 21.88 |
| CDX86707 | Canola | mitochondrion | 27.34 | 21.88 |
| CDY52310 | Canola | mitochondrion | 27.34 | 21.88 |
| CDX71789 | Canola | mitochondrion | 28.91 | 21.76 |
| CDY48371 | Canola | mitochondrion | 28.91 | 21.76 |
| CDX89071 | Canola | mitochondrion | 28.91 | 21.76 |
| CDX89069 | Canola | mitochondrion | 28.91 | 21.76 |
| CDY41147 | Canola | mitochondrion | 28.91 | 21.76 |
| CDX95640 | Canola | mitochondrion | 27.34 | 21.74 |
| CDX95639 | Canola | mitochondrion | 27.34 | 21.74 |
| CDX83393 | Canola | mitochondrion | 27.34 | 21.74 |
| CDX90829 | Canola | mitochondrion | 27.34 | 21.21 |
| CDY21268 | Canola | mitochondrion | 27.34 | 21.21 |
Protein Annotations
| EnsemblPlants:CDY51792 | EnsemblPlantsGene:GSBRNA2T00004240001 | GO:A0A078IPC6 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 |
| InterPro:SAUR_fam | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF29 | PFAM:PF02519 | ProteinID:CDY51792 | ProteinID:CDY51792.1 |
| SEG:seg | UniParc:UPI0004EBAF59 | UniProt:A0A078IPC6 | MapMan:35.1 | : | : |
Description
BnaC02g44790DBnaC02g44790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPC6]
Coordinates
chrLK033027:-:85878..86264
Molecular Weight (calculated)
15238.3 Da
IEP (calculated)
7.503
GRAVY (calculated)
-0.643
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFEEHVHKQ MVFKFHFPHL HILHHHNHHH VPKGCVAIMV GHEGDEEGLH RFIVPLMFLN HPLFLRLLKE AEEEYGFKHA GPISIPCRVD KFKHVQEIID
101: EEIHRRHSHG NGHNNHSHHH HNNHLRCF
101: EEIHRRHSHG NGHNNHSHHH HNNHLRCF
001: MGFEENQKQS PKQSPNHIKH MVFKFHFHVP HLHILPHHHH HHHHDVPKGC VAIMVGHEDD EEGLHRFVVP LVFLSHPLFL DLLKEAEKEY GFKHDGPITI
101: PCGVDEFKHV QEVIDEETHR RHSHGGHGHN NHNHHNNHLR CF
101: PCGVDEFKHV QEVIDEETHR RHSHGGHGHN NHNHHNNHLR CF
Arabidopsis Description
At5g53590 [Source:UniProtKB/TrEMBL;Acc:Q6NPG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.