Factsheet for Bra037405.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07152	Canola	cytosol	97.78	99.25
AT4G00880.1	Thale cress	cytosol	82.22	90.98
Bra039264.1-P	Field mustard	cytosol	51.85	58.82
Bra007639.1-P	Field mustard	cytosol	50.37	57.14
Bra004515.1-P	Field mustard	cytosol	49.63	54.92
Bra022663.1-P	Field mustard	cytosol	40.0	42.19
Bra003044.1-P	Field mustard	cytosol	39.26	35.33
Bra000380.1-P	Field mustard	mitochondrion	32.59	27.33
Bra020841.1-P	Field mustard	mitochondrion	31.85	27.04
Bra019369.1-P	Field mustard	mitochondrion	30.37	26.97
Bra013630.1-P	Field mustard	mitochondrion	31.85	26.88
Bra029452.1-P	Field mustard	mitochondrion	30.37	25.62
Bra007552.1-P	Field mustard	mitochondrion	31.85	25.29
Bra000772.1-P	Field mustard	mitochondrion	30.37	24.85
Bra014476.1-P	Field mustard	mitochondrion	31.11	24.71
Bra018478.1-P	Field mustard	mitochondrion	26.67	24.66
Bra029934.1-P	Field mustard	mitochondrion	22.22	16.48

Protein Annotations

EnsemblPlants:Bra037405.1	EnsemblPlants:Bra037405.1-P	EnsemblPlantsGene:Bra037405	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF29	PFAM:PF02519	SEG:seg	UniParc:UPI00025420E1
UniProt:M4F8J3	MapMan:35.1	:	:	:	:

Description

AT4G00880 (E=2e-046) | auxin-responsive family protein

Coordinates

chrA09:-:684564..684971

Molecular Weight (calculated)

15982.9 Da

IEP (calculated)

7.642

GRAVY (calculated)

-0.780

Length

135 amino acids

Sequence
(BLAST)

001: MGNGDKLISH WSFHIPRLHY HHNHNHHEHD HEKVPKGCLA VKVGQGEEQE RFVIPVWYFN HPLFGQLLKE AEEEFGFAQK GTITIPCHVE EFRYVRGMID
101: RENSKFLGAY NTLGHHHHHH PHPHPHNHLI RCFKV

Best Arabidopsis Sequence Match ( AT4G00880.1 )
(BLAST)

001: MGNGDKVMSH WSFHIPRLHH HEHDHEKVPK GCLAVKVGQG EEQERFVIPV MYFNHPLFGQ LLKEAEEEFG FAQKGTITIP CHVEEFRYVQ GLIDRENTRF
101: LGTNLLDHHH HHHNHLIRCF RV

Arabidopsis Description

AT4g00880 protein [Source:UniProtKB/TrEMBL;Acc:O23089]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.