Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G07710.1 | Thale cress | cytosol, mitochondrion, nucleus | 26.06 | 25.52 |
| AT5G14280.1 | Thale cress | nucleus | 31.69 | 14.95 |
| AT4G00270.1 | Thale cress | nucleus | 29.58 | 13.91 |
| AT2G25650.1 | Thale cress | nucleus | 30.99 | 11.4 |
| AT2G36340.1 | Thale cress | cytosol | 26.76 | 9.18 |
Protein Annotations
| ArrayExpress:AT5G41530 | EnsemblPlants:AT5G41530.1 | EnsemblPlantsGene:AT5G41530 | EntrezGene:834155 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | ProteinID:AED94689.1 | ProteinID:BAB11459.1 | RefSeq:AT5G41530 | RefSeq:AT5G41530-TAIR-G |
| RefSeq:NP_198968.1 | SEG:seg | TAIR:AT5G41530 | TAIR:AT5G41530.1 | TMHMM:TMhelix | Unigene:At.55301 |
| UniParc:UPI000009FC07 | UniProt:Q9FFS7 | MapMan:35.2 | : | : | : |
Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9FFS7]
Coordinates
chr5:+:16611660..16612088
Molecular Weight (calculated)
16719.3 Da
IEP (calculated)
4.415
GRAVY (calculated)
-0.049
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFYLYVTRC KQLLNYNNME TDNGDKEKSE EDDLCALKDA LEAVILFQGL SEYQKKLMFP NLKNLGAETI KELIDEWKEL NVEELNLNIK KQTFFTKFAN
101: ASWSLMLLIQ QENNFCFWMF YVIPTSLFFV CCVLLHLLND GS
101: ASWSLMLLIQ QENNFCFWMF YVIPTSLFFV CCVLLHLLND GS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.