Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 3
  • nucleus 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70451 Canola cytosol 90.32 90.32
CDX78469 Canola cytosol 90.32 90.32
CDY68077 Canola mitochondrion 4.84 5.66
CDX69698 Canola vacuole 20.16 4.62
CDX97175 Canola vacuole 20.16 3.7
CDY16634 Canola endoplasmic reticulum, vacuole 14.52 3.58
CDY44735 Canola extracellular, vacuole 14.52 3.57
Protein Annotations
EnsemblPlants:CDX69699EnsemblPlantsGene:GSBRNA2T00135729001Gene3D:3.30.70.330GO:A0A078C0N7GO:GO:0003674GO:GO:0003676
GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sfInterPro:RRM_dom
InterPro:SF3B14_RRMPANTHER:PTHR12785PANTHER:PTHR12785:SF7PFAM:PF00076PFscan:PS50102ProteinID:CDX69699
ProteinID:CDX69699.1SMART:SM00360SUPFAM:SSF54928UniParc:UPI0004EE99D7MapMan:16.4.1.2.4.6:
Description
BnaA10g20480D
Coordinates
chrLK031790:+:1449959..1450333
Molecular Weight (calculated)
14478.4 Da
IEP (calculated)
9.775
GRAVY (calculated)
-0.634
Length
124 amino acids
Sequence
(BLAST)
001: MTTVSLRKQN TRLPPEVNRV LYVRNLPFNI TSEEMYDIFG KYGAIRQIRI GCNKDTKGTA FVVYEDIYDA KQAVDHLSGF NVANRYLIVL YYQHAKMSKK
101: FDQKKNEEEV AKLQEKYGIS TKDK
Best Arabidopsis Sequence Match ( AT5G12190.1 )
(BLAST)
001: MTTISLRKSN TRLPPEVNRV LYVRNLPFNI TSEEMYDIFG KYGAIRQIRI GCDKATKGTA FVVYEDIYDA KNAVDHLSGF NVANRYLIVL YYQHAKMSKK
101: FDQKKSEDEI TKLQEKYGVS TKDK
Arabidopsis Description
Splicing factor 3B subunit 6-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP4]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.