Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78469 | Canola | cytosol | 100.0 | 100.0 |
| CDX69699 | Canola | cytosol | 90.32 | 90.32 |
| CDY68077 | Canola | mitochondrion | 5.65 | 6.6 |
| CDX69698 | Canola | vacuole | 19.35 | 4.44 |
| CDY16634 | Canola | endoplasmic reticulum, vacuole | 14.52 | 3.58 |
| CDY44735 | Canola | extracellular, vacuole | 14.52 | 3.57 |
| CDX97175 | Canola | vacuole | 19.35 | 3.55 |
Protein Annotations
| EnsemblPlants:CDX70451 | EnsemblPlantsGene:GSBRNA2T00140271001 | Gene3D:3.30.70.330 | GO:A0A078C0K1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:SF3B14_RRM | PANTHER:PTHR12785 | PANTHER:PTHR12785:SF7 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX70451 |
| ProteinID:CDX70451.1 | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000253F9D1 | MapMan:16.4.1.2.4.6 | : |
Description
BnaC03g05350D
Coordinates
chrLK031791:-:489249..489623
Molecular Weight (calculated)
14464.4 Da
IEP (calculated)
9.775
GRAVY (calculated)
-0.634
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTISLRKQN TRLPPEVNRV LYVRNLPFNI TSEEMYDIFG KYGAIRQIRI GCNKDTKGTA FVVYEDIYDA KNAVDHLSGF NVANRYLIVL YYQHAKMSKK
101: FDQKKNEEEV AKLQEKYGVS TKDK
101: FDQKKNEEEV AKLQEKYGVS TKDK
001: MTTISLRKSN TRLPPEVNRV LYVRNLPFNI TSEEMYDIFG KYGAIRQIRI GCDKATKGTA FVVYEDIYDA KNAVDHLSGF NVANRYLIVL YYQHAKMSKK
101: FDQKKSEDEI TKLQEKYGVS TKDK
101: FDQKKSEDEI TKLQEKYGVS TKDK
Arabidopsis Description
Splicing factor 3B subunit 6-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9FMP4]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.