Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87657 | Canola | extracellular | 68.89 | 54.39 |
| CDX87658 | Canola | extracellular | 80.0 | 45.57 |
| CDX87660 | Canola | extracellular | 73.33 | 41.25 |
| CDY39063 | Canola | extracellular | 71.11 | 40.0 |
| CDY13529 | Canola | extracellular | 71.11 | 40.0 |
| CDX73205 | Canola | extracellular | 68.89 | 38.75 |
| CDX85923 | Canola | extracellular | 68.89 | 38.75 |
| CDX68117 | Canola | extracellular | 68.89 | 38.75 |
| CDX85922 | Canola | extracellular | 64.44 | 36.71 |
| CDY13531 | Canola | extracellular | 64.44 | 36.25 |
| CDY39061 | Canola | extracellular | 64.44 | 36.25 |
| CDX85920 | Canola | extracellular | 62.22 | 35.44 |
| CDY13530 | Canola | extracellular | 64.44 | 35.37 |
| CDY39062 | Canola | extracellular | 64.44 | 35.37 |
| CDX74722 | Canola | extracellular | 57.78 | 32.5 |
| CDY51813 | Canola | extracellular | 55.56 | 31.25 |
| CDX86368 | Canola | extracellular | 53.33 | 30.0 |
| CDX74730 | Canola | extracellular | 53.33 | 30.0 |
| CDY51812 | Canola | extracellular | 53.33 | 30.0 |
| CDX74723 | Canola | extracellular | 53.33 | 29.63 |
| CDY13551 | Canola | extracellular | 53.33 | 28.24 |
Protein Annotations
| EnsemblPlants:CDX73203 | EnsemblPlantsGene:GSBRNA2T00103696001 | ProteinID:CDX73203 | ProteinID:CDX73203.1 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0004EE99DD | MapMan:35.2 | : | : | : |
Description
BnaC06g36510D
Coordinates
chrLK031797:+:2679613..2679867
Molecular Weight (calculated)
5121.4 Da
IEP (calculated)
8.536
GRAVY (calculated)
0.738
Length
45 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKFASIITL LFAALVVFAA FEAPTMVEAK LCERSWDMVR SLWKQ
1: MAKFASIITL IFAALVLFAA FDAPAMVEAQ KLCEKPSGTW SGVCGNSNAC KNQCINLEGA KHGSCNYVFP AHKCICYVPC
Arabidopsis Description
PDF1.2ADefensin-like protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI23]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.