Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39062 | Canola | extracellular | 100.0 | 100.0 |
| CDY39061 | Canola | extracellular | 71.95 | 73.75 |
| CDY13531 | Canola | extracellular | 71.95 | 73.75 |
| CDX87658 | Canola | extracellular | 69.51 | 72.15 |
| CDX73205 | Canola | extracellular | 68.29 | 70.0 |
| CDX68117 | Canola | extracellular | 68.29 | 70.0 |
| CDY39063 | Canola | extracellular | 68.29 | 70.0 |
| CDX85923 | Canola | extracellular | 68.29 | 70.0 |
| CDY13529 | Canola | extracellular | 68.29 | 70.0 |
| CDX85922 | Canola | extracellular | 65.85 | 68.35 |
| CDX87660 | Canola | extracellular | 65.85 | 67.5 |
| CDX73203 | Canola | extracellular | 35.37 | 64.44 |
| CDX85920 | Canola | extracellular | 60.98 | 63.29 |
| CDY13551 | Canola | extracellular | 54.88 | 52.94 |
| CDY51813 | Canola | extracellular | 51.22 | 52.5 |
| CDX74722 | Canola | extracellular | 50.0 | 51.25 |
| CDX87657 | Canola | extracellular | 35.37 | 50.88 |
| CDX86368 | Canola | extracellular | 48.78 | 50.0 |
| CDX74730 | Canola | extracellular | 48.78 | 50.0 |
| CDY51812 | Canola | extracellular | 48.78 | 50.0 |
| CDX74723 | Canola | extracellular | 48.78 | 49.38 |
Protein Annotations
| MapMan:26.8.3.2.1 | Gene3D:3.30.30.10 | GO:A0A078HMF8 | UniProt:A0A078HMF8 | EnsemblPlants:CDY13530 | ProteinID:CDY13530 |
| ProteinID:CDY13530.1 | ProteinID:CDY39062.1 | InterPro:Defensin_plant | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 |
| GO:GO:0031640 | EnsemblPlantsGene:GSBRNA2T00077855001 | InterPro:IPR036574 | PFAM:PF00304 | ScanProsite:PS00940 | PANTHER:PTHR33147 |
| PANTHER:PTHR33147:SF4 | SMART:SM00505 | SUPFAM:SSF57095 | InterPro:Scorpion_toxin-like | InterPro:Scorpion_toxin-like_sf | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0004EDCDED | SEG:seg | : | : | : |
Description
BnaC02g23410DBnaA02g17510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMF8]
Coordinates
chrLK032036:-:58616..58950
Molecular Weight (calculated)
9240.5 Da
IEP (calculated)
9.170
GRAVY (calculated)
0.237
Length
82 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKFASIITL LFAALVFFAA FEAPMMVEGQ QPKYCRKQSK TWSGLCTKSG SCKKQCIRVE KAAHGSCNYI FPIHKCICYY LC
1: MAKFASIITL IFAALVLFAA FDAPAMVEAQ KLCEKPSGTW SGVCGNSNAC KNQCINLEGA KHGSCNYVFP AHKCICYVPC
Arabidopsis Description
PDF1.2ADefensin-like protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI23]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.