Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74723 | Canola | extracellular | 92.5 | 91.36 |
| CDY51812 | Canola | extracellular | 91.25 | 91.25 |
| CDX74722 | Canola | extracellular | 91.25 | 91.25 |
| CDX74730 | Canola | extracellular | 87.5 | 87.5 |
| CDX86368 | Canola | extracellular | 72.5 | 72.5 |
| CDX73203 | Canola | extracellular | 31.25 | 55.56 |
| CDY13531 | Canola | extracellular | 51.25 | 51.25 |
| CDY39061 | Canola | extracellular | 51.25 | 51.25 |
| CDY13530 | Canola | extracellular | 52.5 | 51.22 |
| CDY39062 | Canola | extracellular | 52.5 | 51.22 |
| CDX87658 | Canola | extracellular | 47.5 | 48.1 |
| CDX73205 | Canola | extracellular | 47.5 | 47.5 |
| CDY39063 | Canola | extracellular | 47.5 | 47.5 |
| CDX85922 | Canola | extracellular | 46.25 | 46.84 |
| CDX87660 | Canola | extracellular | 46.25 | 46.25 |
| CDY13529 | Canola | extracellular | 46.25 | 46.25 |
| CDX85923 | Canola | extracellular | 45.0 | 45.0 |
| CDX68117 | Canola | extracellular | 45.0 | 45.0 |
| CDX85920 | Canola | extracellular | 43.75 | 44.3 |
| CDX87657 | Canola | extracellular | 31.25 | 43.86 |
| CDY13551 | Canola | extracellular | 41.25 | 38.82 |
Protein Annotations
| Gene3D:3.30.30.10 | MapMan:35.2 | GO:A0A078IRU1 | UniProt:A0A078IRU1 | EnsemblPlants:CDY51813 | ProteinID:CDY51813 |
| ProteinID:CDY51813.1 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 |
| EnsemblPlantsGene:GSBRNA2T00004281001 | InterPro:IPR036574 | PFAM:PF00304 | PANTHER:PTHR33147 | PANTHER:PTHR33147:SF4 | SMART:SM00505 |
| SUPFAM:SSF57095 | InterPro:Scorpion_toxin-like | InterPro:Scorpion_toxin-like_sf | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EE4F3E |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g53190DBnaC04g53190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRU1]
Coordinates
chrLK033030:-:81889..82550
Molecular Weight (calculated)
9252.5 Da
IEP (calculated)
8.989
GRAVY (calculated)
0.040
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKFASIITF LFVVLIIFSA FEAPTTVEGQ KSCKRQPNSG RKYCMKDSEC RKVCVEVEKA IRATCDYIFP RRRCFCHFPC
1: MAKSAAIITF LFAALVLFAA FEAPIMVEAQ KLCEKPSGTW SGVCGNSNAC KNQCINLEGA KHGSCNYVFP AHKCICYFPC
Arabidopsis Description
PDF1.3PDF1.3 [Source:UniProtKB/TrEMBL;Acc:A0A178VSS6]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.