Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008225.1-P | Field mustard | extracellular | 100.0 | 100.0 |
| CDY13531 | Canola | extracellular | 98.75 | 98.75 |
| CDX68117 | Canola | extracellular | 75.0 | 75.0 |
| CDY39063 | Canola | extracellular | 75.0 | 75.0 |
| CDX85923 | Canola | extracellular | 75.0 | 75.0 |
| CDY13529 | Canola | extracellular | 75.0 | 75.0 |
| CDX73205 | Canola | extracellular | 73.75 | 73.75 |
| CDX87658 | Canola | extracellular | 72.5 | 73.42 |
| CDY39062 | Canola | extracellular | 73.75 | 71.95 |
| CDY13530 | Canola | extracellular | 73.75 | 71.95 |
| CDX87660 | Canola | extracellular | 70.0 | 70.0 |
| CDX85922 | Canola | extracellular | 68.75 | 69.62 |
| CDX85920 | Canola | extracellular | 65.0 | 65.82 |
| CDX73203 | Canola | extracellular | 36.25 | 64.44 |
| CDY13551 | Canola | extracellular | 58.75 | 55.29 |
| CDX87657 | Canola | extracellular | 38.75 | 54.39 |
| CDX74730 | Canola | extracellular | 51.25 | 51.25 |
| CDX74722 | Canola | extracellular | 51.25 | 51.25 |
| CDY51812 | Canola | extracellular | 51.25 | 51.25 |
| CDY51813 | Canola | extracellular | 51.25 | 51.25 |
| CDX74723 | Canola | extracellular | 51.25 | 50.62 |
| CDX86368 | Canola | extracellular | 50.0 | 50.0 |
Protein Annotations
| MapMan:26.8.3.2.1 | Gene3D:3.30.30.10 | EnsemblPlants:CDY39061 | ProteinID:CDY39061 | ProteinID:CDY39061.1 | InterPro:Defensin_plant |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0031640 | EnsemblPlantsGene:GSBRNA2T00067206001 | InterPro:IPR036574 |
| PFAM:PF00304 | ScanProsite:PS00940 | PANTHER:PTHR33147 | PANTHER:PTHR33147:SF4 | SMART:SM00505 | SUPFAM:SSF57095 |
| InterPro:Scorpion_toxin-like | InterPro:Scorpion_toxin-like_sf | SignalP:SignalP-noTM | GO:T1SRV8 | UniProt:T1SRV8 | TMHMM:TMhelix |
| UniParc:UPI0002545D3A | SEG:seg | : | : | : | : |
Description
BnaA02g17500DBnaA02g17500D protein [Source:UniProtKB/TrEMBL;Acc:T1SRV8]
Coordinates
chrLK032439:+:274053..274749
Molecular Weight (calculated)
8919.0 Da
IEP (calculated)
8.769
GRAVY (calculated)
0.065
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKFASIITL IFAALILFAA FEAPTKVEGQ KLCRKPSGTW SGLCANSDAC RKQCIRLEKA RDGSCKYEFP AHKCFCYYPC
1: MAKFASIITL IFAALVLFAA FDAPAMVEAQ KLCEKPSGTW SGVCGNSNAC KNQCINLEGA KHGSCNYVFP AHKCICYVPC
Arabidopsis Description
PDF1.2ADefensin-like protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI23]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.