Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85920 | Canola | extracellular | 92.41 | 92.41 |
| CDX87658 | Canola | extracellular | 87.34 | 87.34 |
| CDX73205 | Canola | extracellular | 86.08 | 85.0 |
| CDY39063 | Canola | extracellular | 86.08 | 85.0 |
| CDX85923 | Canola | extracellular | 86.08 | 85.0 |
| CDX68117 | Canola | extracellular | 84.81 | 83.75 |
| CDY13529 | Canola | extracellular | 84.81 | 83.75 |
| CDX87660 | Canola | extracellular | 83.54 | 82.5 |
| CDY39061 | Canola | extracellular | 69.62 | 68.75 |
| CDY13531 | Canola | extracellular | 69.62 | 68.75 |
| CDY39062 | Canola | extracellular | 68.35 | 65.85 |
| CDY13530 | Canola | extracellular | 68.35 | 65.85 |
| CDX73203 | Canola | extracellular | 36.71 | 64.44 |
| CDY13551 | Canola | extracellular | 59.49 | 55.29 |
| CDX87657 | Canola | extracellular | 39.24 | 54.39 |
| CDX74730 | Canola | extracellular | 46.84 | 46.25 |
| CDX74722 | Canola | extracellular | 46.84 | 46.25 |
| CDY51812 | Canola | extracellular | 46.84 | 46.25 |
| CDY51813 | Canola | extracellular | 46.84 | 46.25 |
| CDX74723 | Canola | extracellular | 46.84 | 45.68 |
| CDX86368 | Canola | extracellular | 45.57 | 45.0 |
Protein Annotations
| MapMan:26.8.3.2.1 | Gene3D:3.30.30.10 | GO:A0A078D9Z8 | EnsemblPlants:CDX85922 | ProteinID:CDX85922 | ProteinID:CDX85922.1 |
| InterPro:Defensin_plant | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0031640 | EnsemblPlantsGene:GSBRNA2T00143754001 |
| InterPro:IPR036574 | PFAM:PF00304 | ScanProsite:PS00940 | PANTHER:PTHR33147 | PANTHER:PTHR33147:SF4 | SMART:SM00505 |
| SUPFAM:SSF57095 | InterPro:Scorpion_toxin-like | InterPro:Scorpion_toxin-like_sf | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EEDF1A |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g22120D
Coordinates
chrLK031843:+:843257..843861
Molecular Weight (calculated)
8659.5 Da
IEP (calculated)
8.210
GRAVY (calculated)
0.209
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKAATITTF LFAALVFFAA FEAPTMVDAK LCERPSGTWS GVCGNNNECK KQCIRLEGAR HGSCNYVFPA HKCICYFPC
1: MAKSATIITF LFAALVLFAA FEAPTMVEAQ KLCEKPSGTW SGVCGNSNAC KNQCINLEGA KHGSCNYVFP AHKCICYVPC
Arabidopsis Description
PDF1.2CPDF1.2c [Source:UniProtKB/TrEMBL;Acc:A0A178UR42]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.