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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra018161.1-P Field mustard extracellular 100.0 98.59
CDY71288 Canola extracellular 98.57 97.18
AT3G47295.1 Thale cress extracellular 82.86 81.69
CDX80347 Canola extracellular 57.14 54.79
CDY69338 Canola extracellular 57.14 54.79
Protein Annotations
EnsemblPlants:CDX99061EnsemblPlantsGene:GSBRNA2T00107196001InterPro:PSYPANTHER:PTHR37177ProteinID:CDX99061ProteinID:CDX99061.1
SEG:segSignalP:SignalP-noTMUniParc:UPI0004EDFCEDMapMan:35.2::
Description
BnaA06g17520D
Coordinates
chrLK031908:-:123206..123768
Molecular Weight (calculated)
7397.0 Da
IEP (calculated)
10.110
GRAVY (calculated)
0.059
Length
70 amino acids
Sequence
(BLAST)
1: MSFGVRLLLF LILTLPLVTS SGRNTPVSGI GKTGVAKRLL MVSIEDYGDP SANTRHDPSV PTNAKADTTP
Best Arabidopsis Sequence Match ( AT3G47295.1 )
(BLAST)
1: MSFGTRLLLF LILTLPLVTS SSPNTLHVSG IVKTGTTSRF LMMTIEDYDD PSANTRHDPS VPTNAKADTT P
Arabidopsis Description
PSY2Protein PSY2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LE92]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.