Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58650.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT5G58650.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT5G58650.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT5G58650.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002629.1-P | Field mustard | extracellular | 100.0 | 100.0 |
| CDY69338 | Canola | extracellular | 100.0 | 100.0 |
| AT5G58650.1 | Thale cress | extracellular | 64.38 | 62.67 |
| CDX99061 | Canola | extracellular | 54.79 | 57.14 |
| CDY71288 | Canola | extracellular | 54.79 | 56.34 |
Protein Annotations
| EnsemblPlants:CDX80347 | EnsemblPlantsGene:GSBRNA2T00133399001 | InterPro:PSY | PANTHER:PTHR37177 | ProteinID:CDX80347 | ProteinID:CDX80347.1 |
| ProteinID:CDY69338.1 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0002543752 | UniProt:A0A078JP59 | MapMan:35.2 |
Description
BnaC09g33950DBnaAnng30080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JP59]
Coordinates
chrLK031820:+:2010101..2010698
Molecular Weight (calculated)
7610.2 Da
IEP (calculated)
10.426
GRAVY (calculated)
0.111
Length
73 amino acids
Sequence
(BLAST)
(BLAST)
1: MSCVVRLVVI LLLTLTVTSS ARSSVTVSGI GMIGTERRSL MVSVEDYGDP SANPKHNPGV PPATTAQRSP SRG
1: MTFVVRLLVC LLLTLTITSS LARNPVSVSG GFENSGFQRS LLMVNVEDYG DPSANPKHDP GVPPSATGQR VVGRG
Arabidopsis Description
PSY1PSY1 [Source:UniProtKB/TrEMBL;Acc:A0A178UNK7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.