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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX74635
CDY47297

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra040918.1-P Field mustard nucleus 97.39 97.39
CDY62025 Canola nucleus 97.39 97.39
AT1G64490.1 Thale cress nucleus 67.83 62.9
AT5G42060.1 Thale cress cytosol 46.96 58.7
Protein Annotations
EnsemblPlants:CDY47843EnsemblPlantsGene:GSBRNA2T00088316001GO:A0A078IF75InterPro:DEK_CPANTHER:PTHR13215PANTHER:PTHR13215:SF6
PFAM:PF08766ProteinID:CDY47843ProteinID:CDY47843.1SEG:segUniParc:UPI0004EEF3D8UniProt:A0A078IF75
MapMan:35.2:::::
Description
BnaA09g12220DBnaA09g12220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IF75]
Coordinates
chrLK032740:-:61214..61732
Molecular Weight (calculated)
13132.8 Da
IEP (calculated)
9.673
GRAVY (calculated)
-0.935
Length
115 amino acids
Sequence
(BLAST)
001: MEEEAREVVV IDKDLKKKIK DTVNKILKRS SLYQITEAKA REEASSELDL DLSKDPYKLI VREAVERFVE KAVMTIESEM GKHHAQIVQD VEGGSEKSTK
101: KKKKKNKTKK EDSAA
Best Arabidopsis Sequence Match ( AT1G64490.1 )
(BLAST)
001: MEEEEARQVV IDNDLKKKIK ETVKKILKRS SLLEITEIKA REEASSELNL DLSRDPYKII VREAVDSFIE KAIMTIDTEM GKLHTQIVED VDGEVTENAT
101: KTTTKKKKKK KAKKKVEEEE SSPA
Arabidopsis Description
At1g64490 [Source:UniProtKB/TrEMBL;Acc:Q9SGW6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.