Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42060.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT5G42060.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040918.1-P | Field mustard | nucleus | 97.39 | 97.39 |
| CDY47843 | Canola | nucleus | 97.39 | 97.39 |
| AT1G64490.1 | Thale cress | nucleus | 66.96 | 62.1 |
| AT5G42060.1 | Thale cress | cytosol | 46.09 | 57.61 |
Protein Annotations
| EnsemblPlants:CDY62025 | EnsemblPlantsGene:GSBRNA2T00035847001 | GO:A0A078J6D4 | InterPro:DEK_C | PANTHER:PTHR13215 | PANTHER:PTHR13215:SF6 |
| PFAM:PF08766 | ProteinID:CDY62025 | ProteinID:CDY62025.1 | SEG:seg | UniParc:UPI0003C7029B | UniProt:A0A078J6D4 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaCnng39040DBnaCnng39040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6D4]
Coordinates
chrLK034081:-:29146..29729
Molecular Weight (calculated)
13116.8 Da
IEP (calculated)
9.868
GRAVY (calculated)
-0.868
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEAREVAV IDKDLKKKIK DTVNKILKRS SLYQITEVKA REEASSELDL DLSKDPYKLI VREAVERFVE KAVMTIESEM GKHHAQIVQD VEGGSEKSTK
101: KKKKKNKTKK EVSAA
101: KKKKKNKTKK EVSAA
001: MEEEEARQVV IDNDLKKKIK ETVKKILKRS SLLEITEIKA REEASSELNL DLSRDPYKII VREAVDSFIE KAIMTIDTEM GKLHTQIVED VDGEVTENAT
101: KTTTKKKKKK KAKKKVEEEE SSPA
101: KTTTKKKKKK KAKKKVEEEE SSPA
Arabidopsis Description
At1g64490 [Source:UniProtKB/TrEMBL;Acc:Q9SGW6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.