CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011347_P001	Maize	cytosol, nucleus, peroxisome	91.01	91.19
Os01t0614900-01	Rice	cytosol	76.54	75.14
TraesCS3B01G250900.2	Wheat	cytosol	73.8	74.02
TraesCS3A01G220600.2	Wheat	cytosol	73.8	73.95
TraesCS3D01G231900.1	Wheat	cytosol	73.61	73.82
HORVU3Hr1G054070.2	Barley	mitochondrion	73.22	69.16
TraesCS2D01G300300.1	Wheat	cytosol	31.38	62.21
KRH23906	Soybean	cytosol	34.7	51.75
Bra021999.1-P	Field mustard	cytosol	35.09	51.51
CDY50484	Canola	cytosol	35.09	51.51
AT5G45900.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	34.8	51.08
CDX87757	Canola	cytosol	34.7	51.01
GSMUA_Achr2P06280_001	Banana	cytosol, nucleus, peroxisome	37.93	50.72
PGSC0003DMT400050524	Potato	cytosol	35.19	50.42
Solyc11g068930.1.1	Tomato	cytosol	34.8	49.79
VIT_10s0003g01150.t01	Wine grape	cytosol	36.07	46.95

Protein Annotations

MapMan:19.3.3.3	Gene3D:3.40.140.100	Gene3D:3.40.140.70	Gene3D:3.40.50.720	InterPro:Atg7	InterPro:Atg7_N
UniProt:C5XR11	EnsemblPlants:EES03274	ProteinID:EES03274	ProteinID:EES03274.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006914
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008641	GO:GO:0009056
GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0010150	GO:GO:0016410	GO:GO:0016740
GO:GO:0050832	PFAM:PF00899	PFAM:PF16420	PANTHER:PTHR10953	PANTHER:PTHR10953:SF3	EnsemblPlantsGene:SORBI_3003G219600
SUPFAM:SSF69572	unigene:Sbi.19484	InterPro:ThiF_NAD_FAD-bd	UniParc:UPI00081AE8C7	InterPro:Ubiquitin-activating_enz	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:55483658..55490242

Molecular Weight (calculated)

112177.0 Da

IEP (calculated)

5.946

GRAVY (calculated)

-0.115

Length

1023 amino acids

Sequence
(BLAST)

0001: MAGAGAVGIP RELMVQRIQS LVEEGFWDAL RRLKLDVLGT DDSPIPITGY YTPRQRRPMA SFFNLRSGSL VPPSLNSVGD RNNCPVPGTL INTNNMRGFQ
0101: NLDIEQLLKA EAKKILDDIV SGKVEEDPSV LLRFLVTSFA DLKNWKVYYN VAFPSLVFNS RMTLLNLQPA SKVLTKEEAA SIYTSLQKWR ASSETTVVPF
0201: FLVSISSDSS ASIRQLKDWK ACQGNYKKLL FGFYDHGCRS DCPGWVIRNY VTFLSIRWKI EKVQFFCYRE YKGNPDLEQS LIGEASFPSP CGVDDPDFLP
0301: DAIGWEGINP RKGTKEMKPK EIDLQSMNPA SQDEEKQLMH LKLMGWRHFP VNIDKLSHVR VLLLGAGTLG CEVARLLTTW GVRKLTVVDS NCVATSDLVK
0401: QSLYIDKDCG VPRVTAIVTH LKERCPAVEV EGIQMEIPVP GHPVSSSKMA SVLDDFKHLQ TLVAANDAVF LLTDTWESRW LPTLLCASEN KIAISAVLGC
0501: DSYLVMRHGA GPGTSGGTDE VITQIENLST EDAPGHQRLG CCFCNDASSL IKPIPYETLP GLTSVASGKA VELFARMLHH PDEIHAPGDT AGMETEHQLG
0601: LLPHQLRGSL PKCGLSMELS NSSVNCMACS IAVLSEYRRR GLDFVMQAIN YPTYLKDFTG VSDLKMPDTC PKIPASISVN SDKVSDVRCL LLGAGTLGCD
0701: VARILMDCGV RKLTIVDSGC VVVSNLARQS LYTSDDRGAP KATAILRHLV ERCPSVDAQG IRMEIPMPGH PVSPGEAAGV LQDCERLKEL VASHDAVFLL
0801: TDTRESRWLP TLLCTNENKI AITAALGYDS YLVMRHGAGP GISCDASSVA TATDKLSTED ALGRQRLGCY FCNDVIAPVD SVSNRTLDQQ CTVTRPGLAS
0901: IASGRAADLF TRMLHHPDGI HAPGEIAGTS SGHQHGILPH QMRGSLSQYN LLTLLGYSSS NCTACSNAVL SEYRRRGMDF VMQVINEPTY LEDLTGLTDL
1001: MKSTSYSQVE WVDETDEDEF VEV

Best Arabidopsis Sequence Match ( AT5G45900.1 )
(BLAST)

001: MAEKETPAII LQFAPLNSSV DEGFWHSFSS LKLDKLGIDD SPISITGFYG PCGHPQVSNH LTLLSESLPL DEQSLIASTS HGNRNKCPVP GILYNTNTVE
101: SFNKLDKQSL LKAEANKIWE DIQSGKALED PSVLPRFLVI SFADLKKWSF RYWFAFPAFV LDPPVSLIEL KPASEYFSSE EAESVSAACN DWRDSDLTTD
201: VPFFLVSVSS DSKASIRHLK DLEACQGDHQ KLLFGFYDPC HLPSNPGWPL RNYLALIRSR WNLETVWFFC YRESRGFADL NLSLVGQASI TLSSGESAET
301: VPNSVGWELN KGKRVPRSIS LANSMDPTRL AVSAVDLNLK LMRWRALPSL NLNVLSSVKC LLLGAGTLGC QVARTLMGWG IRNITFVDYG KVAMSNPVRQ
401: SLYNFEDCLG RGEFKAVAAV KSLKQIFPAM ETSGVVMAIP MPGHPISSQE EDSVLGDCKR LSELIESHDA VFLLTDTRES RWLPSLLCAN ANKIAINAAL
501: GFDSYMVMRH GAGPTSLSDD MQNLDINKTN TQRLGCYFCN DVVAPQDSMT DRTLDQQCTV TRPGLAPIAG ALAVELLVGV LQHPLGINAK GDNSSLSNTG
601: NNDDSPLGIL PHQIRGSVSQ FSQITLLGQA SNSCTACSET VISEYRERGN SFILEAINHP TYLEDLTGLT ELKKAANSFN LDWEDDDTDD DDVAVDL

Arabidopsis Description

ATG7Ubiquitin-like modifier-activating enzyme atg7 [Source:UniProtKB/Swiss-Prot;Acc:Q94CD5]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.