Factsheet for VIT_10s0003g01150.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23906	Soybean	cytosol	70.48	80.76
Solyc11g068930.1.1	Tomato	cytosol	70.48	77.48
PGSC0003DMT400050524	Potato	cytosol	70.1	77.17
CDX87757	Canola	cytosol	65.27	73.71
CDY50484	Canola	cytosol	65.14	73.46
Bra021999.1-P	Field mustard	cytosol	65.01	73.31
AT5G45900.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	64.38	72.6
GSMUA_Achr2P06280_001	Banana	cytosol, nucleus, peroxisome	62.72	64.44
TraesCS2D01G300300.1	Wheat	cytosol	31.81	48.45
TraesCS3B01G250900.2	Wheat	cytosol	47.2	36.37
TraesCS3D01G231900.1	Wheat	cytosol	46.95	36.18
TraesCS3A01G220600.2	Wheat	cytosol	46.95	36.14
EES03274	Sorghum	cytosol, nucleus, plastid	46.95	36.07
Os01t0614900-01	Rice	cytosol	47.71	35.99
Zm00001d011347_P001	Maize	cytosol, nucleus, peroxisome	46.44	35.75
HORVU3Hr1G054070.2	Barley	mitochondrion	47.46	34.44
VIT_08s0105g00150.t01	Wine grape	cytosol	5.09	19.42

Protein Annotations

EntrezGene:100251554	wikigene:100251554	MapMan:19.3.3.3	Gene3D:3.40.140.100	Gene3D:3.40.140.70	Gene3D:3.40.50.720
InterPro:Atg7	InterPro:Atg7_N	ProteinID:CCB55678	ProteinID:CCB55678.1	UniProt:F6HM90	EMBL:FN595992
GO:GO:0000045	GO:GO:0000407	GO:GO:0000422	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006501
GO:GO:0006914	GO:GO:0006950	GO:GO:0006995	GO:GO:0007154	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008641	GO:GO:0009056	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607
GO:GO:0009987	GO:GO:0009991	GO:GO:0010150	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538
GO:GO:0019778	GO:GO:0019779	GO:GO:0034727	GO:GO:0044805	GO:GO:0050832	EntrezGene:LOC100251554
wikigene:LOC100251554	PFAM:PF00899	PFAM:PF16420	PANTHER:PTHR10953	PANTHER:PTHR10953:SF3	SUPFAM:SSF69572
TIGR:TC60972	TIGRFAMs:TIGR01381	InterPro:ThiF_NAD_FAD-bd	UniParc:UPI0002107FB3	InterPro:Ubiquitin-activating_enz	ArrayExpress:VIT_10s0003g01150
EnsemblPlantsGene:VIT_10s0003g01150	EnsemblPlants:VIT_10s0003g01150.t01	RefSeq:XP_002273902	RefSeq:XP_002273902.2	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:2522903..2529535

Molecular Weight (calculated)

86648.6 Da

IEP (calculated)

6.117

GRAVY (calculated)

-0.095

Length

786 amino acids

Sequence
(BLAST)

001: MLSYSISIPE KPILRNRGGS FTFIVSPKLQ ICNTGGGGER ERGIRSDPIR LGFLFSQTVP SFVTQRAIKL KSFLCMAGQE SGAVLQFAPF QSSVDEGFWH
101: RLSSLKLNKL GIDDSPISIT GFYAPCSHSQ VSNHLTLLAE SLPPEPSEQS STPPISRGNR NRCSVPGILY NTNTLESFHA LDKQSLLKAE AEKIWNDIHS
201: GRAEEDCSVL SRFLLISFAD LKKWSFHYWF AFPALVLDPP ATLVDLKPAS QWFSLEEAES VSAACNEWRN SSSTADVPFF LVSIASNSRA TIRHLKDWEA
301: CQEDGHKLLF GFYDPCHLPK NPGWPLRNFL VLIYSRWNIK KVQFLCYREN RGFADLGLSL VGEAQISAPQ EWRDELHVPN VVGWELNRGK KVYRCISLAK
401: SMDPTRLAIS AADLNLKLMR WRALPSLNLN ILSTMKCLLL GAGTLGCQVA RMLMAWGVRK ITLLDNGKVA MSNPLRQSLY TLDDCLNGGE FKALAAVNSL
501: KRIFPAVEAE GVVMAIPMPG HPVPSQEEES VLDDCRCLCE LIESHDAVFL LTDTRESRWL PTLLCANANK MTITAALGFD SFLVMRHGAG PLSSTIDNRA
601: EAMNALSADM SKFSPTDSDG GQRLGCYFCN DVVAPVDSTS NRTLDQQCTV TRPGLAPIAS ALAVELLVGI LHHPHGIFAE GDIANSSSNG INEQPLGILP
701: HQIRGSLAQF SQMTLVGHSS NSCTACCDTV VSEYRKRGMD FILQAINHPT YLEDLTGLTE LMKSASSFKL DWDNDTDADD DDCVEI

Best Arabidopsis Sequence Match ( AT5G45900.1 )
(BLAST)

001: MAEKETPAII LQFAPLNSSV DEGFWHSFSS LKLDKLGIDD SPISITGFYG PCGHPQVSNH LTLLSESLPL DEQSLIASTS HGNRNKCPVP GILYNTNTVE
101: SFNKLDKQSL LKAEANKIWE DIQSGKALED PSVLPRFLVI SFADLKKWSF RYWFAFPAFV LDPPVSLIEL KPASEYFSSE EAESVSAACN DWRDSDLTTD
201: VPFFLVSVSS DSKASIRHLK DLEACQGDHQ KLLFGFYDPC HLPSNPGWPL RNYLALIRSR WNLETVWFFC YRESRGFADL NLSLVGQASI TLSSGESAET
301: VPNSVGWELN KGKRVPRSIS LANSMDPTRL AVSAVDLNLK LMRWRALPSL NLNVLSSVKC LLLGAGTLGC QVARTLMGWG IRNITFVDYG KVAMSNPVRQ
401: SLYNFEDCLG RGEFKAVAAV KSLKQIFPAM ETSGVVMAIP MPGHPISSQE EDSVLGDCKR LSELIESHDA VFLLTDTRES RWLPSLLCAN ANKIAINAAL
501: GFDSYMVMRH GAGPTSLSDD MQNLDINKTN TQRLGCYFCN DVVAPQDSMT DRTLDQQCTV TRPGLAPIAG ALAVELLVGV LQHPLGINAK GDNSSLSNTG
601: NNDDSPLGIL PHQIRGSVSQ FSQITLLGQA SNSCTACSET VISEYRERGN SFILEAINHP TYLEDLTGLT ELKKAANSFN LDWEDDDTDD DDVAVDL

Arabidopsis Description

ATG7Ubiquitin-like modifier-activating enzyme atg7 [Source:UniProtKB/Swiss-Prot;Acc:Q94CD5]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.