Factsheet for PGSC0003DMT400050524

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g068930.1.1	Tomato	cytosol	97.34	97.2
KRH23906	Soybean	cytosol	71.15	74.05
Bra021999.1-P	Field mustard	cytosol	69.61	71.31
CDY50484	Canola	cytosol	69.61	71.31
CDX87757	Canola	cytosol	69.47	71.26
AT5G45900.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	69.19	70.88
VIT_10s0003g01150.t01	Wine grape	cytosol	77.17	70.1
GSMUA_Achr2P06280_001	Banana	cytosol, nucleus, peroxisome	67.79	63.27
TraesCS2D01G300300.1	Wheat	cytosol	32.63	45.16
Zm00001d011347_P001	Maize	cytosol, nucleus, peroxisome	50.98	35.65
TraesCS3B01G250900.2	Wheat	cytosol	50.84	35.59
Os01t0614900-01	Rice	cytosol	51.82	35.51
TraesCS3A01G220600.2	Wheat	cytosol	50.42	35.26
EES03274	Sorghum	cytosol, nucleus, plastid	50.42	35.19
TraesCS3D01G231900.1	Wheat	cytosol	50.14	35.1
HORVU3Hr1G054070.2	Barley	mitochondrion	50.42	33.24

Protein Annotations

EntrezGene:102590967	MapMan:19.3.3.3	Gene3D:3.40.140.100	Gene3D:3.40.140.70	Gene3D:3.40.50.720	InterPro:Atg7
InterPro:Atg7_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006914	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008641	GO:GO:0009056	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987
GO:GO:0010150	GO:GO:0050832	UniProt:M1BQG1	PFAM:PF00899	PFAM:PF16420	EnsemblPlantsGene:PGSC0003DMG400019634
PGSC:PGSC0003DMG400019634	EnsemblPlants:PGSC0003DMT400050524	PANTHER:PTHR10953	PANTHER:PTHR10953:SF3	SUPFAM:SSF69572	TIGRFAMs:TIGR01381
InterPro:ThiF_NAD_FAD-bd	UniParc:UPI000294E835	InterPro:Ubiquitin-activating_enz	RefSeq:XP_006362849.1	SEG:seg	:

Description

Autophagy protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019634]

Coordinates

chr11:-:40758920..40764299

Molecular Weight (calculated)

78088.0 Da

IEP (calculated)

5.381

GRAVY (calculated)

-0.084

Length

714 amino acids

Sequence
(BLAST)

001: MADTGKGTIL QFAPFQSFVD EGFWHKLSSL KLNKLRLDES PIPITGFYAP CSHPQVSNHL TLLAESLPAD SDDEPSSLLA SQGNRNRCPV PGVLLNTNTL
101: ESFYALDKQS LLKAEAKKIW DDIYSGKVEE DSSVLLRFLV ISFADLKKWS FHYWFAFPAL VLDPPATLVN LKPASQCFTS EEAESVSSAC NEWRSKSSTA
201: DIPFFLVSIG SNSIATLRHL RELETCQNNG QKVLFGFYDP CHLPNNPGWP LRNYLAYICS RWGLGKIHFF CYRENRGFAD LGLSLVGEAE ISLSQGGRSH
301: QNMPNVVGWE LNKGKKGLRC ISLAKTMDPT RLAVSAADLN LKLMRWRTLP SLNLEMLAST RCLLLGAGTL GCQVARMLMA WGVRKITLVD SGKVSMSNPI
401: RQSLYALDDC LNGGKFKAVA AVESLKRIFP AVEAEGVVMA IPMPGHPVSS QEESSILQDC RDLSDLINSH DAIFLLTDTR ESRWLPSLLC ASANKIAITA
501: ALGFDSFLVM RHGAGPLDAL RNSQAETSSN VSASMENLSL SNQNESVRLG CYFCNDVVAP IDSTANRTLD QQCTVTRPGL APIASALAVE LLVGVLHHPS
601: GICAKAEFAN SNDNGSTEQP LGILPHQIRG SISQFSQMTL VGHASTCCTA CCSTVVSEYR TKGMDFILQA INHPTYLEDL TGLTELMKSA GSYTLDWDND
701: SENDDNDDDD CVEI

Best Arabidopsis Sequence Match ( AT5G45900.1 )
(BLAST)

001: MAEKETPAII LQFAPLNSSV DEGFWHSFSS LKLDKLGIDD SPISITGFYG PCGHPQVSNH LTLLSESLPL DEQSLIASTS HGNRNKCPVP GILYNTNTVE
101: SFNKLDKQSL LKAEANKIWE DIQSGKALED PSVLPRFLVI SFADLKKWSF RYWFAFPAFV LDPPVSLIEL KPASEYFSSE EAESVSAACN DWRDSDLTTD
201: VPFFLVSVSS DSKASIRHLK DLEACQGDHQ KLLFGFYDPC HLPSNPGWPL RNYLALIRSR WNLETVWFFC YRESRGFADL NLSLVGQASI TLSSGESAET
301: VPNSVGWELN KGKRVPRSIS LANSMDPTRL AVSAVDLNLK LMRWRALPSL NLNVLSSVKC LLLGAGTLGC QVARTLMGWG IRNITFVDYG KVAMSNPVRQ
401: SLYNFEDCLG RGEFKAVAAV KSLKQIFPAM ETSGVVMAIP MPGHPISSQE EDSVLGDCKR LSELIESHDA VFLLTDTRES RWLPSLLCAN ANKIAINAAL
501: GFDSYMVMRH GAGPTSLSDD MQNLDINKTN TQRLGCYFCN DVVAPQDSMT DRTLDQQCTV TRPGLAPIAG ALAVELLVGV LQHPLGINAK GDNSSLSNTG
601: NNDDSPLGIL PHQIRGSVSQ FSQITLLGQA SNSCTACSET VISEYRERGN SFILEAINHP TYLEDLTGLT ELKKAANSFN LDWEDDDTDD DDVAVDL

Arabidopsis Description

ATG7Ubiquitin-like modifier-activating enzyme atg7 [Source:UniProtKB/Swiss-Prot;Acc:Q94CD5]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.