Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P11310_001 | Banana | cytosol, nucleus, plasma membrane | 2.89 | 2.86 |
| GSMUA_Achr11P... | Banana | plasma membrane | 0.72 | 2.59 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 0.72 | 2.0 |
| GSMUA_Achr5P00540_001 | Banana | cytosol, nucleus, plasma membrane | 2.41 | 1.98 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 0.72 | 0.09 |
Protein Annotations
| MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008270 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr11G00550_001 | EnsemblPlants:GSMUA_Achr11P00550_001 | EnsemblPlants:GSMUA_Achr11T00550_001 |
| InterPro:IPR011016 | InterPro:IPR013083 | UniProt:M0RN86 | InterPro:MARCH-like | PFAM:PF12906 | PFscan:PS51292 |
| PANTHER:PTHR23012 | PANTHER:PTHR23012:SF25 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI000295842C |
| InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
Putative zinc finger, C3HC4 type, domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G00550_001]
Coordinates
chr11:+:327369..334500
Molecular Weight (calculated)
45676.1 Da
IEP (calculated)
8.252
GRAVY (calculated)
-0.112
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDTLNEKVG SDSHEIVPVR DEKRPKLSID VPTRNMGLSS MNYLKANVPL TPGSDSNRIN ILPICSPASA KMHASPCSTS SKGKPFIKKL LSGLSFKFQP
101: SASEVERYET QAPEAYSAEK GGKPSLLGSF SFSKLFSPRI RRTSSLPINS DLHGKSPHGS TMVHNSSLER KEVQHHISRS LSLPTDIKHI KSKSIKRMNS
201: LGGVFRVIPS TPRVVDLSSP VADSITPVDS AIDGDGEDIP EEEAVCRICM TELSEGSNTL KLECSCKGEL ALVHQECAVK WFSIRGNRNC EVCGQEVENL
301: SVRLLRVQSV QTATTLPGMS RQRTVYFYRF SHEMPVLVII SMLAYFCFLE QLLVRNIYTS CSLSIHDWYN WQVADVGTAA LAISVPFSCI LGVFASLTAS
401: TMGKFYLCEM INVVV
101: SASEVERYET QAPEAYSAEK GGKPSLLGSF SFSKLFSPRI RRTSSLPINS DLHGKSPHGS TMVHNSSLER KEVQHHISRS LSLPTDIKHI KSKSIKRMNS
201: LGGVFRVIPS TPRVVDLSSP VADSITPVDS AIDGDGEDIP EEEAVCRICM TELSEGSNTL KLECSCKGEL ALVHQECAVK WFSIRGNRNC EVCGQEVENL
301: SVRLLRVQSV QTATTLPGMS RQRTVYFYRF SHEMPVLVII SMLAYFCFLE QLLVRNIYTS CSLSIHDWYN WQVADVGTAA LAISVPFSCI LGVFASLTAS
401: TMGKFYLCEM INVVV
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.