Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02603 | Canola | cytosol, peroxisome, plasma membrane | 16.19 | 17.62 |
| Bra023691.1-P | Field mustard | cytosol | 15.95 | 17.14 |
| CDY47182 | Canola | cytosol | 15.95 | 17.14 |
| AT5G18760.1 | Thale cress | plastid | 16.43 | 16.79 |
| GSMUA_Achr11P... | Banana | plasma membrane | 1.19 | 4.31 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 1.43 | 4.0 |
| GSMUA_Achr11P... | Banana | cytosol | 2.86 | 2.89 |
| GSMUA_Achr5P00540_001 | Banana | cytosol, nucleus, plasma membrane | 2.62 | 2.18 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 1.43 | 0.17 |
Protein Annotations
| MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008270 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr1G11310_001 | EnsemblPlants:GSMUA_Achr1P11310_001 | EnsemblPlants:GSMUA_Achr1T11310_001 |
| InterPro:IPR011016 | InterPro:IPR013083 | UniProt:M0RYZ0 | InterPro:MARCH-like | PFAM:PF12906 | PFscan:PS51292 |
| PANTHER:PTHR23012 | PANTHER:PTHR23012:SF84 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI000296E823 |
| InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
Putative zinc finger, C3HC4 type, domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G11310_001]
Coordinates
chr1:-:8633300..8641986
Molecular Weight (calculated)
46189.9 Da
IEP (calculated)
5.704
GRAVY (calculated)
-0.107
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDEYVTGPQ GANEAASSSS SPSSSPSQKI EHQTLQPIVE GITYLNSSNA TDLALQIPSR GTSSSGGFSR GRSFKNKTPV VDGERSSLLN PVLAEDPDKR
101: EGTETAFYAN IVSAFSWKRC TSLPNTPAPC LSPSPINNRA YEQQSSQKPA AQSKVPRSLS VPVRNIVIVR SVSFSVQNED TSSEPPDDQQ GPMTEDNDEE
201: IPEDEAVCRI CLIGLNEGGN WLKMECSCKG ALRLTHEECA VKWFSLRGNK KCEVCSQEVL NLPVTLLRIQ NAAHRDSGQQ HPGQSSNLLL TRTWQDVAVL
301: LLISAMCYFF FLEQLLVNDM KLHAVMVAAP FSLTLGLLGS VFSVALARKE YVWAYSAFQF SLVIIFLHLF YSVIQLKAVF AILIASFAGF GISMGINSLF
401: LQFFAWRDRA VQQQMNTNPV
101: EGTETAFYAN IVSAFSWKRC TSLPNTPAPC LSPSPINNRA YEQQSSQKPA AQSKVPRSLS VPVRNIVIVR SVSFSVQNED TSSEPPDDQQ GPMTEDNDEE
201: IPEDEAVCRI CLIGLNEGGN WLKMECSCKG ALRLTHEECA VKWFSLRGNK KCEVCSQEVL NLPVTLLRIQ NAAHRDSGQQ HPGQSSNLLL TRTWQDVAVL
301: LLISAMCYFF FLEQLLVNDM KLHAVMVAAP FSLTLGLLGS VFSVALARKE YVWAYSAFQF SLVIIFLHLF YSVIQLKAVF AILIASFAGF GISMGINSLF
401: LQFFAWRDRA VQQQMNTNPV
001: MKMQDSAAQE PEIAIIVGDS SSSSLHSSSQ VTEKSTEDVP SCSHLDLSIQ IPSRSLPFGN GRNPKGSLKS TPSFKSGTTS SPRGILRNLS LKKKVISQPE
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV
Arabidopsis Description
AT3g06330/F24P17_21 [Source:UniProtKB/TrEMBL;Acc:Q9SQT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.