Factsheet for Bra023691.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47182	Canola	cytosol	100.0	100.0
AT5G18760.1	Thale cress	plastid	64.19	61.07
GSMUA_Achr1P11310_001	Banana	cytosol, nucleus, plasma membrane	17.14	15.95
Bra040226.1-P	Field mustard	cytosol	9.72	9.03
KRH20994	Soybean	cytosol	6.91	8.79
Bra001193.1-P	Field mustard	cytosol	7.93	7.11
Bra020758.1-P	Field mustard	cytosol	6.65	5.87
Bra029787.1-P	Field mustard	nucleus	5.12	4.38
PGSC0003DMT400002463	Potato	plasma membrane	1.53	3.31
Bra028847.1-P	Field mustard	cytosol	2.3	2.59
Bra029786.1-P	Field mustard	nucleus	2.81	2.42
Bra020240.1-P	Field mustard	cytosol, peroxisome, plasma membrane	2.3	1.83
Solyc06g016770.2.1	Tomato	cytosol, nucleus, plasma membrane	2.3	1.79
Bra002470.1-P	Field mustard	cytosol, nucleus, plasma membrane	2.05	1.67
PGSC0003DMT400002459	Potato	plastid	1.02	1.53
PGSC0003DMT400074985	Potato	cytosol, nucleus, plasma membrane	1.79	1.4
Bra009532.1-P	Field mustard	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra023691	EnsemblPlants:Bra023691.1	EnsemblPlants:Bra023691.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
InterPro:IPR011016	InterPro:IPR013083	UniProt:M4E4I8	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292
PANTHER:PTHR23012	PANTHER:PTHR23012:SF84	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0002543207
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT5G18760 (E=6e-143) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA02:-:4564857..4566688

Molecular Weight (calculated)

43215.2 Da

IEP (calculated)

8.006

GRAVY (calculated)

-0.004

Length

391 amino acids

Sequence
(BLAST)

001: MQDSPPSSQV KEDVTRSQPN KTQSDASIHK LPNPMPIGIL RNLSLKRKAS LPNYEKRLLL SPTVSEASEK PNSSVASLPY WKRCLSLPSS TNAANKLSLA
101: TSTPQASPLG HTDQSTSNRD GASVSRSLSM PGRNKVIVRA VSFDNSSKQH VSNEASGSGS ADEITPVSAE ETEEEIPEEE AVCRICLDVC EEGNTLKMEC
201: SCKGDLRLVH EHCAIKWFST KGTRICDVCR QEVRNLPVIL LRVPTINQLT TRRELTQQNP QPQSISVGQE FVVLVLISTV CYFFFLEHLL IRDLKSQAIF
301: VAAPFSFTLA LLASTFAVVL AIREYMWTYA ALEFALVALL VHLLYVTFGL PVVYSMLFAG ILGFGMAMCL NQLYICYASR LVRVPQNRNL V

Best Arabidopsis Sequence Match ( AT5G18760.1 )
(BLAST)

001: MMEGSSIQPP RNFVLAKDSS TGSSSSSSSS QVKEQSVEDV SRSQPSGSQL DVSIQIPPKP TPSLGILRNL SLKRKASLPN YERRLLLSPS VSETSEKPLV
101: ASPITSPYWK RCLSLPSSNS AKLSLVVSTT PVSAVVHSEQ PKSNKDGLHA SVSRSLSMNR VIVRAVSFDD NKNHISNEAN GDQITPVPAE ETEEEIPEEE
201: AVCRICLDVC EEGNTLKMEC SCKGDLRLVH EHCAIKWFST KGTRICDVCR QEVRNLPVIL LRVPTINQLT NRRELTQQSS EPQSISVGQE FVVLVLISTV
301: CYFFFLEHLL IRDLNSQAIF VAAPFSFTLA LLASTFAVIL AIREYIWTYA ALEFALVALL VHLLYATLRV PVIYAMLFAG ILGFGMAMCL NLLCICYSSR
401: PVRFPRNTNL V

Arabidopsis Description

At5g18760 [Source:UniProtKB/TrEMBL;Acc:Q1H5A5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.