Factsheet for Bra001193.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08057	Canola	cytosol, peroxisome, plasma membrane	93.12	92.91
Bra020758.1-P	Field mustard	cytosol	40.83	40.18
AT3G06330.1	Thale cress	cytosol	30.96	31.69
Bra040226.1-P	Field mustard	cytosol	26.61	27.55
Bra023691.1-P	Field mustard	cytosol	7.11	7.93
Bra028847.1-P	Field mustard	cytosol	4.13	5.19
PGSC0003DMT400004459	Potato	cytosol, nucleus, plasma membrane	5.96	5.04
Solyc09g007680.2.1	Tomato	cytosol, nucleus, plasma membrane	5.5	4.63
Bra029787.1-P	Field mustard	nucleus	4.13	3.94
Bra029786.1-P	Field mustard	nucleus	3.9	3.74
TraesCS6D01G005100.1	Wheat	plasma membrane	3.67	3.43
HORVU6Hr1G001690.9	Barley	cytosol, nucleus	3.44	3.26
TraesCS6A01G001000.1	Wheat	cytosol, nucleus, plasma membrane	3.21	3.18
Bra020240.1-P	Field mustard	cytosol, peroxisome, plasma membrane	2.75	2.44
Bra009532.1-P	Field mustard	endoplasmic reticulum, extracellular	0.69	2.44
KRG90054	Soybean	cytosol, peroxisome, vacuole	2.29	2.11
Bra002470.1-P	Field mustard	cytosol, nucleus, plasma membrane	2.29	2.08
VIT_12s0034g00630.t01	Wine grape	cytosol, nucleus	0.0	0.0

Protein Annotations

MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra001193	EnsemblPlants:Bra001193.1	EnsemblPlants:Bra001193.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
InterPro:IPR011016	InterPro:IPR013083	UniProt:M4CAG4	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292
PANTHER:PTHR23012	PANTHER:PTHR23012:SF84	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0002540AB2
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT3G06330 (E=9e-151) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:+:15236741..15239341

Molecular Weight (calculated)

48281.3 Da

IEP (calculated)

7.915

GRAVY (calculated)

-0.052

Length

436 amino acids

Sequence
(BLAST)

001: MTMRQQDSAA EQREIAIIVE DSSSPLPPHP QGDHQVKQES TEDVPGRTHL DLSIQIPLRP VPFVSGHSSK TSLKSTSSFK SGSTSYSPRG ILRNLSLKKK
101: VVAHLESERS SLLSPSPMET AKTPSTAGLT TSPYWKRCLS LPSRYAAKLS PVVPPQVQVG VPGEPPNKDP TYPAVPRSLS MPGRNKVIVR SISFENHKAR
201: ASSVTSSDQT SPVPTEETDE EIPEEEAVCR ICLDVLEEGN TLKMECSCKG DLRLVHEACA IKWFSTKGTR TCDVCRQEVK NLPVILLRVP TTNQPNNMRD
301: LNQQIQSQTA SAWQEFVVLV LISAVCYFFF LEQLLIRDLN TQAVYIAAPF SLMLGLLASL FAIVLAIREY IWTYAALEFA LVGILVHLLY NAVRLPPIYS
401: ILFAGILGFG IAVCLNSLYL HYFAWRLRVA ENSTQV

Best Arabidopsis Sequence Match ( AT3G06330.1 )
(BLAST)

001: MKMQDSAAQE PEIAIIVGDS SSSSLHSSSQ VTEKSTEDVP SCSHLDLSIQ IPSRSLPFGN GRNPKGSLKS TPSFKSGTTS SPRGILRNLS LKKKVISQPE
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV

Arabidopsis Description

AT3g06330/F24P17_21 [Source:UniProtKB/TrEMBL;Acc:Q9SQT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.