Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400004459 | Potato | cytosol, nucleus, plasma membrane | 70.08 | 70.35 |
| AT3G09760.1 | Thale cress | nucleus | 16.22 | 17.11 |
| TraesCS6D01G005100.1 | Wheat | plasma membrane | 5.6 | 6.21 |
| Solyc11g069350.1.1 | Tomato | cytosol, nucleus, plasma membrane | 5.98 | 5.93 |
| KRG90054 | Soybean | cytosol, peroxisome, vacuole | 5.41 | 5.89 |
| TraesCS6A01G001000.1 | Wheat | cytosol, nucleus, plasma membrane | 4.83 | 5.68 |
| Bra001193.1-P | Field mustard | cytosol | 4.63 | 5.5 |
| Solyc06g016770.2.1 | Tomato | cytosol, nucleus, plasma membrane | 4.83 | 4.96 |
| CDY08057 | Canola | cytosol, peroxisome, plasma membrane | 4.05 | 4.81 |
| CDX74109 | Canola | cytosol, peroxisome, plasma membrane | 3.86 | 4.58 |
| CDY05254 | Canola | cytosol | 3.86 | 4.49 |
| Bra020758.1-P | Field mustard | cytosol | 3.67 | 4.29 |
| Bra040226.1-P | Field mustard | cytosol | 3.47 | 4.28 |
| Solyc07g044780.2.1 | Tomato | cytosol | 4.25 | 4.26 |
| CDY24702 | Canola | cytosol | 3.47 | 4.07 |
| Solyc01g067800.2.1 | Tomato | plastid | 2.7 | 3.65 |
| HORVU6Hr1G001690.9 | Barley | cytosol, nucleus | 2.7 | 3.04 |
| CDY18852 | Canola | cytosol | 2.51 | 3.0 |
| VIT_12s0034g00630.t01 | Wine grape | cytosol, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008270 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:IPR011016 | InterPro:IPR013083 | UniProt:K4CQF7 |
| InterPro:MARCH-like | PFAM:PF12906 | PFscan:PS51292 | PANTHER:PTHR23012 | PANTHER:PTHR23012:SF92 | SMART:SM00744 |
| SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc09g007680.2 | EnsemblPlants:Solyc09g007680.2.1 | TMHMM:TMhelix | UniParc:UPI000276B8FD | InterPro:Znf_RING-CH |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr9:-:1227123..1233091
Molecular Weight (calculated)
57230.7 Da
IEP (calculated)
6.764
GRAVY (calculated)
-0.154
Length
518 amino acids
Sequence
(BLAST)
(BLAST)
001: METSDQRSLA EEDGKNCTNN LNSRVDPPPL LVEKVGESSE IVEELQLCEL QTKQLPLEVP ERTIDGQTED FVRIDMSTSP VQTPKRVIFS PSPSPNHVRL
101: NESPSPSLPW AKSSIKSLLP KISFKLRNKT SDIEKAAMLA LGVSPLPQDK PSILRTLSIK RIFNSKMNRT SSLPITPIEH SNPESTHGDY RDATFYSVKA
201: GVHPILRSHS VPTLIKDESL KQMDCVGNVY RVVPSTPLVP RHDDTSSNAT QTIGCYGSVE NANFGGDITQ EEAVCRICFI ELGEDSETLK MECSCKGELA
301: LAHQSCAVKW FSIKGNKICD VCNEEVRNLP VTLLRIQSTI RRGNGSPADS VRYRVWQDVP VLVLVSMLAY FCFLEQLLVT RMGSGAIAIS LPFSCILGLL
401: ASMTATTMVQ RRYAWVYAVS QFALVVLFAH VFYSLLRVQA VLAVLLATFA GFGGVMCGTS FLLELLKWRS RWNYWSNEPH DSQEGAQPNQ SSEVTPMPQV
501: ESQTRRAEAG TSGVVNGS
101: NESPSPSLPW AKSSIKSLLP KISFKLRNKT SDIEKAAMLA LGVSPLPQDK PSILRTLSIK RIFNSKMNRT SSLPITPIEH SNPESTHGDY RDATFYSVKA
201: GVHPILRSHS VPTLIKDESL KQMDCVGNVY RVVPSTPLVP RHDDTSSNAT QTIGCYGSVE NANFGGDITQ EEAVCRICFI ELGEDSETLK MECSCKGELA
301: LAHQSCAVKW FSIKGNKICD VCNEEVRNLP VTLLRIQSTI RRGNGSPADS VRYRVWQDVP VLVLVSMLAY FCFLEQLLVT RMGSGAIAIS LPFSCILGLL
401: ASMTATTMVQ RRYAWVYAVS QFALVVLFAH VFYSLLRVQA VLAVLLATFA GFGGVMCGTS FLLELLKWRS RWNYWSNEPH DSQEGAQPNQ SSEVTPMPQV
501: ESQTRRAEAG TSGVVNGS
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.