CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08057	Canola	cytosol, peroxisome, plasma membrane	87.41	87.41
CDY24702	Canola	cytosol	40.5	40.05
CDY05254	Canola	cytosol	34.78	34.16
CDY18852	Canola	cytosol	31.81	32.1
AT3G06330.1	Thale cress	cytosol	30.66	31.46
CDY02603	Canola	cytosol, peroxisome, plasma membrane	8.01	9.07
CDY47182	Canola	cytosol	7.32	8.18
CDY62901	Canola	cytosol	4.58	4.77
CDY44727	Canola	cytosol	3.89	4.67
PGSC0003DMT400004459	Potato	cytosol, nucleus, plasma membrane	5.49	4.65
CDY44346	Canola	cytosol	4.35	4.56
CDY07939	Canola	cytosol, nucleus, plasma membrane	4.58	4.44
Solyc09g007680.2.1	Tomato	cytosol, nucleus, plasma membrane	4.58	3.86
TraesCS6D01G005100.1	Wheat	plasma membrane	4.12	3.85
CDY41589	Canola	nucleus	3.89	3.74
HORVU6Hr1G001690.9	Barley	cytosol, nucleus	3.66	3.48
CDY44728	Canola	cytosol, nucleus, plasma membrane	3.43	3.2
CDX70311	Canola	cytosol	2.06	2.93
CDY31533	Canola	cytosol, nucleus, plasma membrane	3.2	2.81
CDY67417	Canola	endoplasmic reticulum, plasma membrane	3.2	2.74
TraesCS6A01G001000.1	Wheat	cytosol, nucleus, plasma membrane	2.75	2.73
CDY10402	Canola	mitochondrion	2.29	2.7
CDY69891	Canola	plasma membrane	1.14	2.69
CDY09194	Canola	cytosol, peroxisome, plasma membrane	2.75	2.51
CDY41588	Canola	nucleus	2.52	2.28
KRG90054	Soybean	cytosol, peroxisome, vacuole	1.83	1.68
CDX73994	Canola	cytosol	1.83	1.68
CDY10383	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	0.69	1.03
VIT_12s0034g00630.t01	Wine grape	cytosol, nucleus	0.0	0.0

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078CD58
EnsemblPlants:CDX74109	ProteinID:CDX74109	ProteinID:CDX74109.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
EnsemblPlantsGene:GSBRNA2T00111864001	InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292
PANTHER:PTHR23012	PANTHER:PTHR23012:SF84	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143
UniParc:UPI0004EE3253	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

BnaA03g29380D

Coordinates

chrLK031800:-:1356196..1359135

Molecular Weight (calculated)

48390.4 Da

IEP (calculated)

8.101

GRAVY (calculated)

-0.062

Length

437 amino acids

Sequence
(BLAST)

001: MTMRQQDSAA EQREIAIIVD DSSSPLPPHP QGDHQVKQES TEDVPGRTHL DLSIQIPLRP VPFVSGHSSK TSLKSTSSFK SGTTSSYSPR GILRNLSLQK
101: KVVAHPESER RSLLSPSPME TAKTPSTAGL TTSPYWKRCL SLPSRYAAKL TPVVPPQAPV GVPGEPPNKD PTYAAVPRSL SMPGRNKVIV RSISFEHHKA
201: RVSSVTSSGQ NSPVPTEETD EEIPEEEAVC RICLDVFEEG NTLKMECSCK GDLRLVHEAC AIKWFSTKGT RTCDVCRQEV KNLPVILLRV PTTNQPNNMR
301: DLNQQIQSQT ASAWQEFVVL VLISAVCYFF FLEQLLIRDL NTQAVYIAAP FSLMLGLLAS LFAIVLAIRE YIWTYAALEF ALVGILVHLL YNAVRLPPIY
401: SILFAGILGF GIAVCLNSLY LHYFAWRLRV AENSTQV

Best Arabidopsis Sequence Match ( AT3G06330.1 )
(BLAST)

001: MKMQDSAAQE PEIAIIVGDS SSSSLHSSSQ VTEKSTEDVP SCSHLDLSIQ IPSRSLPFGN GRNPKGSLKS TPSFKSGTTS SPRGILRNLS LKKKVISQPE
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV

Arabidopsis Description

AT3g06330/F24P17_21 [Source:UniProtKB/TrEMBL;Acc:Q9SQT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.