CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002470.1-P	Field mustard	cytosol, nucleus, plasma membrane	74.1	76.88
CDY09194	Canola	cytosol, peroxisome, plasma membrane	61.04	63.47
AT5G60580.4	Thale cress	cytosol, nucleus, peroxisome	56.83	57.29
CDY67417	Canola	endoplasmic reticulum, plasma membrane	57.43	55.97
KRH22901	Soybean	cytosol	20.88	21.99
VIT_06s0004g02930.t01	Wine grape	cytosol, peroxisome, plasma membrane	21.08	21.17
TraesCS2B01G051700.1	Wheat	cytosol, peroxisome, plasma membrane	9.04	9.11
CDY41589	Canola	nucleus	8.23	9.01
TraesCS2A01G039300.2	Wheat	cytosol, peroxisome, plasma membrane	9.04	8.89
HORVU2Hr1G005630.19	Barley	mitochondrion	9.84	8.67
CDY41588	Canola	nucleus	6.02	6.21
CDY10383	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	3.61	6.21
CDY07939	Canola	cytosol, nucleus, plasma membrane	5.42	6.0
CDY69891	Canola	plasma membrane	2.21	5.91
CDX73994	Canola	cytosol	5.02	5.24
CDY10402	Canola	mitochondrion	3.82	5.14
CDY18852	Canola	cytosol	4.02	4.62
CDY05254	Canola	cytosol	3.82	4.27
CDX70311	Canola	cytosol	2.61	4.23
CDY44728	Canola	cytosol, nucleus, plasma membrane	3.41	3.62
CDY24702	Canola	cytosol	3.01	3.39
CDY44346	Canola	cytosol	2.81	3.36
CDY62901	Canola	cytosol	2.81	3.34
CDY44727	Canola	cytosol	2.41	3.3
CDX74109	Canola	cytosol, peroxisome, plasma membrane	2.81	3.2
CDY47182	Canola	cytosol	2.21	2.81
CDY02603	Canola	cytosol, peroxisome, plasma membrane	1.81	2.33
CDY08057	Canola	cytosol, peroxisome, plasma membrane	2.01	2.29

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078H3Z7
UniProt:A0A078H3Z7	EnsemblPlants:CDY31533	ProteinID:CDY31533	ProteinID:CDY31533.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00047847001
InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF25	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EF36B1
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaA10g13380DBnaA10g13380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3Z7]

Coordinates

chrLK032274:-:127318..130561

Molecular Weight (calculated)

54590.9 Da

IEP (calculated)

8.081

GRAVY (calculated)

-0.083

Length

498 amino acids

Sequence
(BLAST)

001: MIINTNLEKI NKFLVFLMDT EEKPLDPLDS SHGDSAPSDQ AEEGSSSAIT EETSANVQQW RRNNLSLQIP SRAANLSPEE SVVIKMPPTP SPTPRRVNFS
101: LTSSSPAPTS SSAAPPRTKS SLKNLIPKVG FKPKLSNTDV EKGQGDVSCQ EKALISRSLS LSKLFTPRIK RTSSLPVTPI VLLNSESARG GSSVTPQTPS
201: SKGRVQIARS RSVPVNDKEA SLKGMDSFFR VIPSTTPRVK EGDVFLNASE AVNTETCDAD GEDIPEEEAV CRICLVDLCE GGETLKMECS CKGELALAHK
301: DCALKWFTIK GNKTCEVCKQ EVKNLPVTLL RIQSIRNSGV PQIDVTGYRV WQEVPVLVII SMLAYFCFLE QLLVEKMGTG AIAISLPFSC ILGLLASMTA
401: STMVMRRFVW IYASVQFALV VLFAHVFYSV VELQPVLSVL LSTFAGFGVC ICGSSVMVEF VRWKRRWRAR RLEHELNHAQ TLPQTLDATT SQHHPNAS

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.