CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69891	Canola	plasma membrane	12.97	25.81
CDX70311	Canola	cytosol	19.46	23.45
CDY10383	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	17.57	22.41
CDY44727	Canola	cytosol	21.62	21.98
CDY62901	Canola	cytosol	15.68	13.84
CDY44346	Canola	cytosol	15.14	13.43
CDY41588	Canola	nucleus	17.03	13.04
CDY41589	Canola	nucleus	13.51	10.99
CDY07939	Canola	cytosol, nucleus, plasma membrane	13.24	10.89
CDX73994	Canola	cytosol	13.24	10.27
CDY44728	Canola	cytosol, nucleus, plasma membrane	12.16	9.59
AT5G03180.2	Thale cress	nucleus	7.57	6.01
KRH32447	Soybean	plasma membrane	6.49	4.94
CDY31533	Canola	cytosol, nucleus, plasma membrane	5.14	3.82
CDY09194	Canola	cytosol, peroxisome, plasma membrane	4.05	3.13
CDY08057	Canola	cytosol, peroxisome, plasma membrane	3.51	2.97
CDY67417	Canola	endoplasmic reticulum, plasma membrane	4.05	2.94
CDY18852	Canola	cytosol	2.97	2.54
CDY05254	Canola	cytosol	2.97	2.47
CDX74109	Canola	cytosol, peroxisome, plasma membrane	2.7	2.29
CDY24702	Canola	cytosol	2.7	2.26
CDY02603	Canola	cytosol, peroxisome, plasma membrane	1.62	1.55
CDY47182	Canola	cytosol	1.35	1.28

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078FBL8
UniProt:A0A078FBL8	EnsemblPlants:CDY10402	ProteinID:CDY10402	ProteinID:CDY10402.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00032316001
InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF92	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EE00FF
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaCnng03030DBnaCnng03030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBL8]

Coordinates

chrLK032003:+:289089..290632

Molecular Weight (calculated)

41805.8 Da

IEP (calculated)

8.420

GRAVY (calculated)

-0.188

Length

370 amino acids

Sequence
(BLAST)

001: MASPRIGRRV GSMSPSSANL KNAFNFKNRN NNADIEEGVA LVFDGREKSN VPRTWSLTNL LTPRKSKKTE SLPATPLAHS NPESMHGSYA FYDQFTSMKR
101: ERTLPIRTLP IRRTRSVPTL IHKDGNMKPS CLLRVIHTPS RVDMHEHDDG GEDVPEEEAV CRICMVELGK DSEAFKMECM CKGELALAHK ECTIKWFTIK
201: GNITCDLCKQ EVKNLPMTLL RVEEYPQDRS SKEAEHTEIS EIINGWQGVP TLVMLLFMEM KWSAIPVALP FACIIGFLGS ATSSTMAKEK YVWILATIQF
301: SFVVLFSHVF YSRIYVKQPV SCIVLATMVG FGLTMFGTTV ITMFIEWRRS HAHHQPTSTH VATPPFQTIE

Best Arabidopsis Sequence Match ( AT5G03180.1 )
(BLAST)

001: MVMDDKDKYR EVVEHWSCEG TSPALMVGDS TEITEMLSPS QHQRWRGLVL DIQSREAHGD FLRANGSLIH SPVSKRFKFS PMSSPRTGRR VGSMSPSSSR
101: NRTNQKNFKN RNHSADIEEG VVSPLGDGSD KSYIPRTWSL TNLLAPRKSK KTESFITHSN PESMNGRYAV EVDPVTSMKG ERLLPIRRTR SVPTFFNKDG
201: SVKPSSVFRV IPTPSRGDEK RLEMTQASKL NENDDGGEDV PEEEAVCRIC MVEMEEDEEA FKMECMCKGE LALAHKTCTI KWFTIKGNIT CDVCKQEVRN
301: LPVTLLRVQD SQNRSRAARD IEISRFNNVW QDIPILVIVS MLAYFCFLEQ LLIIDMKSSA VAIALPFSCI IGLLASMIST TMVKKNYVWI YATVQFGFVV
401: LFAQLFYRVV RFDVKQPVMC IVLATMIGFG LTMTGTTAIN EYLKWRRSNS HLPEEPASTQ VV

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KF77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.