CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62901	Canola	cytosol	94.0	93.56
Bra028847.1-P	Field mustard	cytosol	44.12	53.03
CDX70311	Canola	cytosol	25.66	34.85
CDY10383	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	17.27	24.83
CDY69891	Canola	plasma membrane	10.79	24.19
CDY41589	Canola	nucleus	17.51	16.04
CDY10402	Canola	mitochondrion	13.43	15.14
CDY44728	Canola	cytosol, nucleus, plasma membrane	15.83	14.07
CDY07939	Canola	cytosol, nucleus, plasma membrane	13.91	12.89
CDY44727	Canola	cytosol	9.11	10.44
CDY41588	Canola	nucleus	11.99	10.35
CDX73994	Canola	cytosol	10.79	9.43
KRH32447	Soybean	plasma membrane	8.39	7.2
AT5G03180.2	Thale cress	nucleus	6.0	5.36
CDX74109	Canola	cytosol, peroxisome, plasma membrane	4.56	4.35
CDY08057	Canola	cytosol, peroxisome, plasma membrane	4.32	4.12
CDY24702	Canola	cytosol	4.32	4.07
CDY67417	Canola	endoplasmic reticulum, plasma membrane	4.32	3.52
CDY18852	Canola	cytosol	3.36	3.23
CDY05254	Canola	cytosol	3.12	2.92
CDY47182	Canola	cytosol	2.64	2.81
CDY31533	Canola	cytosol, nucleus, plasma membrane	3.36	2.81
CDY09194	Canola	cytosol, peroxisome, plasma membrane	3.12	2.71
CDY02603	Canola	cytosol, peroxisome, plasma membrane	2.16	2.33

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078I397
UniProt:A0A078I397	EnsemblPlants:CDY44346	ProteinID:CDY44346	ProteinID:CDY44346.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00080002001
InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF92	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EB902F
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaC02g03310DBnaC02g03310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I397]

Coordinates

chrLK032587:-:38596..40675

Molecular Weight (calculated)

46590.2 Da

IEP (calculated)

7.098

GRAVY (calculated)

-0.165

Length

417 amino acids

Sequence
(BLAST)

001: MMMDVDKRPQ DISPAIMDGE ITGEEISPSQ HERWRCLVLD IELRAQEDSH GSKRFNFSPM ASPRIGPSSS SRRRTNLKNV FTFRKNNNAD IEEGSALVSN
101: IPRTWSLTNL LTLKKSNKTE SLPVTPLVHS NPESMHGSYT VDDDQVREHT LPIRRSRSVP TLIDKDGNAK PLGLLRVIPT PSRLDTKTSN DHDGGEDVPE
201: EEAVCRICMV ELGEDSEAFK MECMCKGELA LAHKACTIKW FTIKGNITCD VCKQVVKNLP VTLLRVEDSS SQDRSRRTLN EWHDVPVLVI VSMLAYFCFL
301: EQLLVMEMKS SAVAVALPFS CIIGLLASVI STTMVKRSYV WIFATVQFGL VVLFGHVFYS VLKQPVVCIV LATMIGFGLT MSGTTAINEL FKWRRSHSHH
401: QEPASTQVAP PQSQTAE

Best Arabidopsis Sequence Match ( AT5G03180.1 )
(BLAST)

001: MVMDDKDKYR EVVEHWSCEG TSPALMVGDS TEITEMLSPS QHQRWRGLVL DIQSREAHGD FLRANGSLIH SPVSKRFKFS PMSSPRTGRR VGSMSPSSSR
101: NRTNQKNFKN RNHSADIEEG VVSPLGDGSD KSYIPRTWSL TNLLAPRKSK KTESFITHSN PESMNGRYAV EVDPVTSMKG ERLLPIRRTR SVPTFFNKDG
201: SVKPSSVFRV IPTPSRGDEK RLEMTQASKL NENDDGGEDV PEEEAVCRIC MVEMEEDEEA FKMECMCKGE LALAHKTCTI KWFTIKGNIT CDVCKQEVRN
301: LPVTLLRVQD SQNRSRAARD IEISRFNNVW QDIPILVIVS MLAYFCFLEQ LLIIDMKSSA VAIALPFSCI IGLLASMIST TMVKKNYVWI YATVQFGFVV
401: LFAQLFYRVV RFDVKQPVMC IVLATMIGFG LTMTGTTAIN EYLKWRRSNS HLPEEPASTQ VV

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KF77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.