CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009532.1-P	Field mustard	endoplasmic reticulum, extracellular	39.31	92.68
CDX70311	Canola	cytosol	74.48	70.36
CDY69891	Canola	plasma membrane	19.31	30.11
CDY10402	Canola	mitochondrion	22.41	17.57
CDY62901	Canola	cytosol	25.17	17.42
CDY44346	Canola	cytosol	24.83	17.27
CDY44728	Canola	cytosol, nucleus, plasma membrane	16.21	10.02
CDY41589	Canola	nucleus	14.83	9.45
CDY07939	Canola	cytosol, nucleus, plasma membrane	14.14	9.11
CDX73994	Canola	cytosol	14.14	8.6
CDY41588	Canola	nucleus	13.1	7.87
KRH32447	Soybean	plasma membrane	7.93	4.73
AT5G03180.2	Thale cress	nucleus	7.24	4.51
CDY44727	Canola	cytosol	5.52	4.4
CDY31533	Canola	cytosol, nucleus, plasma membrane	6.21	3.61
CDY67417	Canola	endoplasmic reticulum, plasma membrane	6.21	3.52
CDY09194	Canola	cytosol, peroxisome, plasma membrane	5.17	3.13
CDY24702	Canola	cytosol	2.41	1.58
CDY05254	Canola	cytosol	2.41	1.57
CDY02603	Canola	cytosol, peroxisome, plasma membrane	2.07	1.55
CDY18852	Canola	cytosol	2.07	1.39
CDY47182	Canola	cytosol	1.72	1.28
CDY08057	Canola	cytosol, peroxisome, plasma membrane	1.03	0.69
CDX74109	Canola	cytosol, peroxisome, plasma membrane	1.03	0.69

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078FE46
UniProt:A0A078FE46	EnsemblPlants:CDY10383	ProteinID:CDY10383	ProteinID:CDY10383.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00032287001
InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF92	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EE8E29
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	:	:	:	:

Description

BnaCnng02840DBnaCnng02840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FE46]

Coordinates

chrLK032003:-:162366..163516

Molecular Weight (calculated)

32160.3 Da

IEP (calculated)

6.575

GRAVY (calculated)

0.093

Length

290 amino acids

Sequence
(BLAST)

001: MHGRYAVDQV TSMKRERTLP IRRTRSVPTL IDKDGNAKPV GVLRVISTPS RVDTESLELM HEHHDGGEDV PEEEAVCRIC MVELGQDSEA FKMECMCKGE
101: LALAHKDCTI KWFTIKGNII CDVCKQEVKN LPVTLLHVED DSQDLSSGAE HTESNQGKDV PILVTVSMLA YFCFLEQLLV MDMKSSAVAL ALPFACIIGL
201: LGSATSTTMV KGKYVWIFAT IQYSIVVLFG HVFYSKFDPV TRIVIATMVG FGLTMSGAAV ITMFMKWKRS HAHHQLASTQ VATPPFQTTE

Best Arabidopsis Sequence Match ( AT3G09760.1 )
(BLAST)

001: MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N

Arabidopsis Description

At3g09760/F8A24.19 [Source:UniProtKB/TrEMBL;Acc:Q940P1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.