Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07939 | Canola | cytosol, nucleus, plasma membrane | 35.01 | 37.11 |
| CDY41588 | Canola | nucleus | 34.17 | 33.75 |
| CDY44728 | Canola | cytosol, nucleus, plasma membrane | 28.51 | 29.0 |
| CDY41589 | Canola | nucleus | 24.95 | 26.15 |
| KRH19853 | Soybean | cytosol, peroxisome, plasma membrane | 18.87 | 17.89 |
| CDY69891 | Canola | plasma membrane | 6.92 | 17.74 |
| VIT_08s0040g01950.t01 | Wine grape | cytosol, nucleus, plasma membrane | 18.03 | 16.67 |
| KRH67679 | Soybean | cytosol | 15.3 | 16.67 |
| CDY44727 | Canola | cytosol | 12.16 | 15.93 |
| KRG95972 | Soybean | cytosol, nucleus, plasma membrane | 14.68 | 15.56 |
| CDY10383 | Canola | cytosol, mitochondrion, peroxisome, plasma membrane | 8.6 | 14.14 |
| CDX70311 | Canola | cytosol | 9.01 | 14.01 |
| CDY10402 | Canola | mitochondrion | 10.27 | 13.24 |
| CDY44346 | Canola | cytosol | 9.43 | 10.79 |
| CDY62901 | Canola | cytosol | 9.43 | 10.74 |
| Os04t0105100-01 | Rice | plasma membrane | 10.06 | 10.46 |
| TraesCS2D01G037600.3 | Wheat | plasma membrane | 10.69 | 9.68 |
| EES10335 | Sorghum | nucleus | 10.06 | 9.27 |
| Zm00001d024927_P002 | Maize | cytosol | 9.85 | 9.09 |
| TraesCS6B01G005200.1 | Wheat | cytosol, nucleus, plasma membrane | 7.13 | 7.46 |
| Zm00001d016874_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 7.55 | 7.09 |
| EES04310 | Sorghum | plasma membrane | 7.76 | 6.61 |
| Os06t0340200-02 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 6.71 | 6.44 |
| CDY31533 | Canola | cytosol, nucleus, plasma membrane | 5.24 | 5.02 |
| CDY67417 | Canola | endoplasmic reticulum, plasma membrane | 4.19 | 3.91 |
| CDY09194 | Canola | cytosol, peroxisome, plasma membrane | 3.77 | 3.76 |
| CDY02603 | Canola | cytosol, peroxisome, plasma membrane | 2.94 | 3.63 |
| CDY05254 | Canola | cytosol | 3.14 | 3.37 |
| CDY24702 | Canola | cytosol | 2.73 | 2.94 |
| CDY08057 | Canola | cytosol, peroxisome, plasma membrane | 2.52 | 2.75 |
| CDY47182 | Canola | cytosol | 2.1 | 2.56 |
| CDY18852 | Canola | cytosol | 1.68 | 1.85 |
| CDX74109 | Canola | cytosol, peroxisome, plasma membrane | 1.68 | 1.83 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | GO:A0A078CCR2 |
| EnsemblPlants:CDX73994 | ProteinID:CDX73994 | ProteinID:CDX73994.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| EnsemblPlantsGene:GSBRNA2T00111727001 | InterPro:IPR011016 | InterPro:IPR013083 | InterPro:MARCH-like | PFAM:PF12906 | PFscan:PS51292 |
| PANTHER:PTHR23012 | PANTHER:PTHR23012:SF92 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniPathway:UPA00143 |
| UniParc:UPI0004EDCC7D | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
BnaA03g30530D
Coordinates
chrLK031800:-:833680..836850
Molecular Weight (calculated)
52739.1 Da
IEP (calculated)
7.966
GRAVY (calculated)
-0.303
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGRDQPRVE EHTSLPPPPQ REGDSPEIAQ EEDPWRRGIV SGTTPEDTGE DLSRRHASLT SSPVAKRVNF SPMSSPRIGQ RGASLSPSSS SSRNKPNSLK
101: NLVPKLSFKN RNSDIEKADD LAFEGNGRDG STWTLSNILT PRLKKTESLP VTPLAHSNPG STHGRYVVDP VTSMKKGPPL PIHRSRSVPA FNKDGSLRQA
201: GVFRVIPTPN MTPARNIMKL NDTDVDGGED VPEEEAVCRI CMVELGEDSD AFKMECMCRG ELALAHKECT IKWFTIKGNR TCDVCKQEVQ NLPVTLLRMQ
301: NSQGNFGDAD TEASHYRQDS FRNWTSFGSV QIMSSFYFFV WKDVPVLVIV SMLAYFCFLE QLLLTKMKSG AIAISLPFSC VLGLLASMTT TTMVTKQYIW
401: IYATVQFGLV VFFSHIFFTL VHMKPVVSIL LATLVGFGLT MSGQTGLAEF AKWRRIQRAD EPPSSSQADP PPVQTAG
101: NLVPKLSFKN RNSDIEKADD LAFEGNGRDG STWTLSNILT PRLKKTESLP VTPLAHSNPG STHGRYVVDP VTSMKKGPPL PIHRSRSVPA FNKDGSLRQA
201: GVFRVIPTPN MTPARNIMKL NDTDVDGGED VPEEEAVCRI CMVELGEDSD AFKMECMCRG ELALAHKECT IKWFTIKGNR TCDVCKQEVQ NLPVTLLRMQ
301: NSQGNFGDAD TEASHYRQDS FRNWTSFGSV QIMSSFYFFV WKDVPVLVIV SMLAYFCFLE QLLLTKMKSG AIAISLPFSC VLGLLASMTT TTMVTKQYIW
401: IYATVQFGLV VFFSHIFFTL VHMKPVVSIL LATLVGFGLT MSGQTGLAEF AKWRRIQRAD EPPSSSQADP PPVQTAG
001: MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N
Arabidopsis Description
At3g09760/F8A24.19 [Source:UniProtKB/TrEMBL;Acc:Q940P1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.