CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G06330.1	Thale cress	cytosol	55.2	56.1
CDY05254	Canola	cytosol	55.2	53.71
Bra040226.1-P	Field mustard	cytosol	44.34	45.61
CDY24702	Canola	cytosol	37.18	36.43
CDY08057	Canola	cytosol, peroxisome, plasma membrane	33.26	32.95
CDX74109	Canola	cytosol, peroxisome, plasma membrane	32.1	31.81
CDY47182	Canola	cytosol	9.24	10.23
CDY02603	Canola	cytosol, peroxisome, plasma membrane	9.01	10.1
CDY67417	Canola	endoplasmic reticulum, plasma membrane	5.77	4.89
CDY09194	Canola	cytosol, peroxisome, plasma membrane	4.85	4.38
TraesCS6A01G001000.1	Wheat	cytosol, nucleus, plasma membrane	4.16	4.09
CDY31533	Canola	cytosol, nucleus, plasma membrane	4.62	4.02
CDX70311	Canola	cytosol	2.77	3.91
TraesCS6D01G005100.1	Wheat	plasma membrane	4.16	3.85
CDY44346	Canola	cytosol	3.23	3.36
CDY62901	Canola	cytosol	3.23	3.34
CDY69891	Canola	plasma membrane	1.39	3.23
HORVU6Hr1G001690.9	Barley	cytosol, nucleus	3.23	3.04
CDY10402	Canola	mitochondrion	2.54	2.97
CDY44728	Canola	cytosol, nucleus, plasma membrane	3.0	2.77
Solyc09g007680.2.1	Tomato	cytosol, nucleus, plasma membrane	3.0	2.51
CDY41588	Canola	nucleus	2.77	2.48
CDY07939	Canola	cytosol, nucleus, plasma membrane	2.54	2.44
PGSC0003DMT400004459	Potato	cytosol, nucleus, plasma membrane	2.77	2.33
CDY44727	Canola	cytosol	1.85	2.2
KRG90054	Soybean	cytosol, peroxisome, vacuole	2.31	2.11
CDY10383	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	1.39	2.07
CDY41589	Canola	nucleus	2.08	1.98
CDX73994	Canola	cytosol	1.85	1.68
VIT_12s0034g00630.t01	Wine grape	cytosol, nucleus	0.0	0.0

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078G1K1
UniProt:A0A078G1K1	EnsemblPlants:CDY18852	ProteinID:CDY18852	ProteinID:CDY18852.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00006031001
InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF84	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EEDEE3
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaAnng03170DBnaAnng03170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1K1]

Coordinates

chrLK032089:+:679800..682649

Molecular Weight (calculated)

47838.4 Da

IEP (calculated)

7.870

GRAVY (calculated)

-0.102

Length

433 amino acids

Sequence
(BLAST)

001: MTMKQQDQAA QQPEIAIIVG GSSSSSPPQA EHQVKEESTE DVSSSLQSGT HLDLSIPSRP KSSLKSTSSF KSVTTSSPRG ILRNLSFKKK AVVAHPESER
101: SSLLSPNLME TPKKTIITAG STTSPYWKRC LSLPTRHASK LSPVPAEPPN QEKGEKEDCI LLQKDSTYPS VTRSLSMPGR NIVIVRSISF DNHKAHVSSE
201: TNADQTSPVP TEETDEEIPE EEAVCRICLD VLEEGNTLKM ECSCKGDLRL VHEACAIKWF STKGTRTCDV CRQEVQNLPV TLLRVPTANQ TNNRRARGQQ
301: NMQTQTASAW QEFVVLVLIS SVCYFFFLEQ LLIRDLASKA VYIAGPFSLT LGFLASVFAS VLAIREYIWT YAALEFALVG ILVHLLYTIV RLPAIYAILF
401: AGILGFGIAV CLNSLYLYYF AWRVRVAQNS NPV

Best Arabidopsis Sequence Match ( AT3G06330.1 )
(BLAST)

001: MKMQDSAAQE PEIAIIVGDS SSSSLHSSSQ VTEKSTEDVP SCSHLDLSIQ IPSRSLPFGN GRNPKGSLKS TPSFKSGTTS SPRGILRNLS LKKKVISQPE
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV

Arabidopsis Description

AT3g06330/F24P17_21 [Source:UniProtKB/TrEMBL;Acc:Q9SQT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.