Factsheet for PGSC0003DMT400004459

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g007680.2.1	Tomato	cytosol, nucleus, plasma membrane	70.35	70.08
AT3G09760.1	Thale cress	nucleus	18.02	18.94
PGSC0003DMT400002463	Potato	plasma membrane	2.52	7.18
Bra001193.1-P	Field mustard	cytosol	5.04	5.96
TraesCS6D01G005100.1	Wheat	plasma membrane	5.23	5.78
KRG90054	Soybean	cytosol, peroxisome, vacuole	5.23	5.68
CDY08057	Canola	cytosol, peroxisome, plasma membrane	4.65	5.49
CDX74109	Canola	cytosol, peroxisome, plasma membrane	4.65	5.49
TraesCS6A01G001000.1	Wheat	cytosol, nucleus, plasma membrane	4.65	5.45
PGSC0003DMT400020932	Potato	cytosol, peroxisome, plasma membrane	5.43	5.45
PGSC0003DMT400074985	Potato	cytosol, nucleus, plasma membrane	4.84	5.01
CDY24702	Canola	cytosol	4.07	4.75
Bra020758.1-P	Field mustard	cytosol	4.07	4.74
PGSC0003DMT400058815	Potato	cytosol, peroxisome, plasma membrane	3.68	4.51
CDY05254	Canola	cytosol	3.29	3.82
Bra040226.1-P	Field mustard	cytosol	3.1	3.8
HORVU6Hr1G001690.9	Barley	cytosol, nucleus	2.91	3.26
CDY18852	Canola	cytosol	2.33	2.77
PGSC0003DMT400002459	Potato	plastid	1.16	2.3
VIT_12s0034g00630.t01	Wine grape	cytosol, nucleus	0.0	0.0

Protein Annotations

EntrezGene:102593861	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR011016	InterPro:IPR013083
UniProt:M0ZNH3	InterPro:MARCH-like	PFAM:PF12906	EnsemblPlantsGene:PGSC0003DMG400001776	PGSC:PGSC0003DMG400001776	EnsemblPlants:PGSC0003DMT400004459
PFscan:PS51292	PANTHER:PTHR23012	PANTHER:PTHR23012:SF92	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix
UniParc:UPI000296DDB7	RefSeq:XP_006361814.1	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Zinc finger family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001776]

Coordinates

chr9:+:6057067..6063471

Molecular Weight (calculated)

56991.3 Da

IEP (calculated)

6.881

GRAVY (calculated)

-0.148

Length

516 amino acids

Sequence
(BLAST)

001: METSNQRSLA EEDDKNCTNN LHSRVDPPPP LLVEKVGESS EIVEELQLCE LQMKQLPLEV PERTIDGQTE DFVRIDMSTS PVQTPKRVIF SPSPSPNHVR
101: LNESPSPSLP WAKSSIKSLL PKLSFKFRNK TTDIEKSAML ALGVSPLPQD KPSIFRTLSV KRIFNSKMNR TSSLPVTPIE HSNPESTHGD YGDATFYSVK
201: AGVHPILRSH SVPTLIKDES SKQMDYVGSV YRVVPSTPLV PRHDDTSLDA TQTVGAVENA NFGGDITQEE AVCRICFIEL GEGSETLKME CSCKGELALA
301: HQACAVKWFS IKGNKICDVC NQEVRNLPVT LLRIQSTIRR GNGAPAESVR YRVWQDVPVL VIVSMLAYFC FLEQLLVTRM GSGAIAISLP FSCILGLLAS
401: MTATTMVQRR YAWVYAVSQF ALVVLFAHVF YSLLRVQAVL AVLLATFAGF GGVMCGTSFL LELLKWRSRW NYWSNEPHDS HEGAQPNQSS EVTPTPQVES
501: QTRRAEAGTS GVVNGS

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.