Factsheet for Bra040226.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18852	Canola	cytosol	45.61	44.34
Bra020758.1-P	Field mustard	cytosol	29.93	28.44
Bra001193.1-P	Field mustard	cytosol	27.55	26.61
AT3G06330.1	Thale cress	cytosol	25.18	24.88
Bra023691.1-P	Field mustard	cytosol	9.03	9.72
Bra028847.1-P	Field mustard	cytosol	3.56	4.32
TraesCS6D01G005100.1	Wheat	plasma membrane	4.51	4.07
Bra020240.1-P	Field mustard	cytosol, peroxisome, plasma membrane	4.51	3.86
Solyc09g007680.2.1	Tomato	cytosol, nucleus, plasma membrane	4.28	3.47
Bra002470.1-P	Field mustard	cytosol, nucleus, plasma membrane	3.8	3.33
Bra029787.1-P	Field mustard	nucleus	3.56	3.28
TraesCS6A01G001000.1	Wheat	cytosol, nucleus, plasma membrane	3.33	3.18
PGSC0003DMT400004459	Potato	cytosol, nucleus, plasma membrane	3.8	3.1
Bra029786.1-P	Field mustard	nucleus	3.09	2.86
KRG90054	Soybean	cytosol, peroxisome, vacuole	2.85	2.53
Bra009532.1-P	Field mustard	endoplasmic reticulum, extracellular	0.71	2.44
HORVU6Hr1G001690.9	Barley	cytosol, nucleus	2.38	2.17
VIT_12s0034g00630.t01	Wine grape	cytosol, nucleus	0.0	0.0

Protein Annotations

MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra040226	EnsemblPlants:Bra040226.1	EnsemblPlants:Bra040226.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
InterPro:IPR011016	InterPro:IPR013083	UniProt:M4FGJ8	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292
PANTHER:PTHR23012	PANTHER:PTHR23012:SF84	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0002544CD8
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT3G06330 (E=7e-143) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA01:-:28212523..28215169

Molecular Weight (calculated)

46270.4 Da

IEP (calculated)

8.095

GRAVY (calculated)

-0.149

Length

421 amino acids

Sequence
(BLAST)

001: MTMKQQDQAA QQPEIAIIVG GSSSSSPPQA EHQVKEESTE DVSSSLQSGT HLDLSIPSRP KSSLKSTSSF KSVSSPSPRG ILRNLSFKKK AVVPHPESER
101: SSLLSPNLME TPKKTIITAG STTSPYWKRC LSLPTRHASK LSPVPAEPPN EKGEKEDCIL LQKDSTYPSV TRSLSMPGRN IVIVRSISFD NHKAHVSSEA
201: NADQTSPVPT EETDEEIPEE EAVCRICLDV LEEGNTLKME CSCKGDLRLV HEACAIKWFS TKGTRTCDVC RQEVQNLPVT LLRVPTANQT NNRRGRGQQN
301: MQTQTASAWQ EFVVLVLISS IRDLASKAVY IAGPFSLTLG FLASVFASVL AIREYIWTYA ALEFALVGIL VHLLYTIVRL PAIYAILFAG ILGFGIAVCL
401: NSLYLYYFAW RVRVAQNSNP V

Best Arabidopsis Sequence Match ( AT3G06330.1 )
(BLAST)

001: MKMQDSAAQE PEIAIIVGDS SSSSLHSSSQ VTEKSTEDVP SCSHLDLSIQ IPSRSLPFGN GRNPKGSLKS TPSFKSGTTS SPRGILRNLS LKKKVISQPE
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV

Arabidopsis Description

AT3g06330/F24P17_21 [Source:UniProtKB/TrEMBL;Acc:Q9SQT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.