Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G001000.1 | Wheat | cytosol, nucleus, plasma membrane | 43.47 | 46.14 |
| HORVU6Hr1G001690.9 | Barley | cytosol, nucleus | 13.7 | 13.91 |
| TraesCS2D01G037600.3 | Wheat | plasma membrane | 8.35 | 7.4 |
| Solyc09g007680.2.1 | Tomato | cytosol, nucleus, plasma membrane | 6.21 | 5.6 |
| PGSC0003DMT400004459 | Potato | cytosol, nucleus, plasma membrane | 5.78 | 5.23 |
| TraesCS7D01G451000.1 | Wheat | cytosol, nucleus, plasma membrane | 5.14 | 4.95 |
| KRH29926 | Soybean | nucleus | 5.14 | 4.59 |
| Bra040226.1-P | Field mustard | cytosol | 4.07 | 4.51 |
| PGSC0003DMT400058815 | Potato | cytosol, peroxisome, plasma membrane | 4.07 | 4.51 |
| Solyc01g067800.2.1 | Tomato | plastid | 3.64 | 4.43 |
| KRH26426 | Soybean | plastid | 4.28 | 4.4 |
| AT3G09760.1 | Thale cress | nucleus | 4.5 | 4.28 |
| AT3G06330.1 | Thale cress | cytosol | 3.85 | 4.23 |
| Solyc11g069350.1.1 | Tomato | cytosol, nucleus, plasma membrane | 4.71 | 4.21 |
| CDY18852 | Canola | cytosol | 3.85 | 4.16 |
| CDX74109 | Canola | cytosol, peroxisome, plasma membrane | 3.85 | 4.12 |
| PGSC0003DMT400020932 | Potato | cytosol, peroxisome, plasma membrane | 4.5 | 4.09 |
| KRH24873 | Soybean | nucleus | 4.5 | 4.09 |
| CDY05254 | Canola | cytosol | 3.64 | 3.82 |
| KRG90054 | Soybean | cytosol, peroxisome, vacuole | 3.85 | 3.79 |
| Bra001193.1-P | Field mustard | cytosol | 3.43 | 3.67 |
| CDY08057 | Canola | cytosol, peroxisome, plasma membrane | 3.43 | 3.66 |
| CDY24702 | Canola | cytosol | 3.21 | 3.39 |
| VIT_05s0020g02080.t01 | Wine grape | cytosol | 3.0 | 3.26 |
| Bra020758.1-P | Field mustard | cytosol | 3.0 | 3.16 |
| CDY44727 | Canola | cytosol | 2.36 | 3.02 |
| KRH11284 | Soybean | cytosol | 1.93 | 2.13 |
| VIT_12s0034g00630.t01 | Wine grape | cytosol, nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G005100.1 | EnsemblPlantsGene:TraesCS6D01G005100 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011016 | InterPro:IPR013083 | InterPro:MARCH-like | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR23012 |
| PANTHER:PTHR23012:SF151 | PFAM:PF12906 | PFscan:PS51292 | SEG:seg | SMART:SM00744 | SUPFAM:SSF57850 |
| TIGR:cd16495 | TMHMM:TMhelix | MapMan:19.2.2.1.5.3.4 | : | : | : |
Description
No Description!
Coordinates
chr6D:+:2272826..2274302
Molecular Weight (calculated)
50220.9 Da
IEP (calculated)
6.501
GRAVY (calculated)
-0.152
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MRCILLWPLV NHPSIHPLGC LFAMAPHLEK NKDDAATTPT MEEEEGEHHC HGDRPLLSAC EQEQQQEQDA DKPLPLPAKR RSSSLSRSSR SGEQGRDEEA
101: VGPGGAARSL SFSRLFNSFR MMATSTTSTT LDIDELAAAE DGCAALNPQQ QQQWKPVCRT QSMPMTSISR RLPAHGSRKR VADSSSLRRF RVSSLSSAAP
201: APLPESSSPP SSPSPSEEEE VGEEEAVCRI CMVALLEEEE EEGGAAGAGD GVLKLECRCK GELALAHRRC ALKWFGIKGN PNCDVCGHDV LNLPVTLRRV
301: AAPPPPPPVA AGDNGTGSQE EGGTARRGFN RGVWRHGTVI LVTVSMLAYF CFLEQLLVGD HGNAAAALAV SVPFAVVLGT FSALTTAGMA SSRCYVWAYS
401: ALQFLLVVLF THLFYRYVNL QAVIAIILSA FAGFGVAICA NAVLLQAARW RAARRPPSPS DLDIPQP
101: VGPGGAARSL SFSRLFNSFR MMATSTTSTT LDIDELAAAE DGCAALNPQQ QQQWKPVCRT QSMPMTSISR RLPAHGSRKR VADSSSLRRF RVSSLSSAAP
201: APLPESSSPP SSPSPSEEEE VGEEEAVCRI CMVALLEEEE EEGGAAGAGD GVLKLECRCK GELALAHRRC ALKWFGIKGN PNCDVCGHDV LNLPVTLRRV
301: AAPPPPPPVA AGDNGTGSQE EGGTARRGFN RGVWRHGTVI LVTVSMLAYF CFLEQLLVGD HGNAAAALAV SVPFAVVLGT FSALTTAGMA SSRCYVWAYS
401: ALQFLLVVLF THLFYRYVNL QAVIAIILSA FAGFGVAICA NAVLLQAARW RAARRPPSPS DLDIPQP
001: MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N
Arabidopsis Description
At3g09760/F8A24.19 [Source:UniProtKB/TrEMBL;Acc:Q940P1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.