Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 1
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400058815 | Potato | cytosol, peroxisome, plasma membrane | 92.19 | 84.09 |
| VIT_05s0020g02080.t01 | Wine grape | cytosol | 32.55 | 29.14 |
| CDY44727 | Canola | cytosol | 3.91 | 4.12 |
| TraesCS6D01G005100.1 | Wheat | plasma membrane | 4.43 | 3.64 |
| TraesCS6A01G001000.1 | Wheat | cytosol, nucleus, plasma membrane | 3.91 | 3.41 |
| Solyc07g044780.2.1 | Tomato | cytosol | 4.43 | 3.29 |
| HORVU6Hr1G001690.9 | Barley | cytosol, nucleus | 3.91 | 3.26 |
| Solyc09g007680.2.1 | Tomato | cytosol, nucleus, plasma membrane | 3.65 | 2.7 |
| Solyc11g069350.1.1 | Tomato | cytosol, nucleus, plasma membrane | 3.65 | 2.68 |
| Solyc06g016770.2.1 | Tomato | cytosol, nucleus, plasma membrane | 1.3 | 0.99 |
Protein Annotations
| MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008270 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:IPR011016 | InterPro:IPR013083 | UniProt:K4AX28 |
| InterPro:MARCH-like | PFAM:PF12906 | PFscan:PS51292 | PANTHER:PTHR23012 | PANTHER:PTHR23012:SF84 | SMART:SM00744 |
| SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc01g067800.2 | EnsemblPlants:Solyc01g067800.2.1 | TMHMM:TMhelix | UniParc:UPI0002763171 | InterPro:Znf_RING-CH |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:76778124..76785857
Molecular Weight (calculated)
42097.3 Da
IEP (calculated)
7.209
GRAVY (calculated)
-0.015
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGLGPSMK KADLSLQIPP RHAGIGTGRK YSPRSPGPTG GFLRALSFKK KSASSDGERS SLLSSDHKVV PGSPLAANFF SSNWQKCASL PVTPASDSSP
101: SVSTPISSRT HGEQQRSNSS RTGASKASMS RSLSVPGRNF IIVRSMSFAT HEEHVPDTGD EITPAPENED REIPEEEAVC RICLAACDEG NTFQMECSCK
201: GDLRLVHEEC AIKWFSVKGN KICEVCRQDV SNLPVTLLRI PSTSQHDNRA EHNNSGRISA WQDFVVLVLI STISYFFFLE QLFVHDMKTQ ALVIAAPFAF
301: TLGILSSIFA IILAIKEYIW SYAALEFAFF AVPLYVLYSM LQLQAVYSIM IASVLGFGAT MSINAMYIQY YSWQFQIAES SSPV
101: SVSTPISSRT HGEQQRSNSS RTGASKASMS RSLSVPGRNF IIVRSMSFAT HEEHVPDTGD EITPAPENED REIPEEEAVC RICLAACDEG NTFQMECSCK
201: GDLRLVHEEC AIKWFSVKGN KICEVCRQDV SNLPVTLLRI PSTSQHDNRA EHNNSGRISA WQDFVVLVLI STISYFFFLE QLFVHDMKTQ ALVIAAPFAF
301: TLGILSSIFA IILAIKEYIW SYAALEFAFF AVPLYVLYSM LQLQAVYSIM IASVLGFGAT MSINAMYIQY YSWQFQIAES SSPV
001: MKMQDSAAQE PEIAIIVGDS SSSSLHSSSQ VTEKSTEDVP SCSHLDLSIQ IPSRSLPFGN GRNPKGSLKS TPSFKSGTTS SPRGILRNLS LKKKVISQPE
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV
Arabidopsis Description
AT3g06330/F24P17_21 [Source:UniProtKB/TrEMBL;Acc:Q9SQT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.