Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400020932 | Potato | cytosol, peroxisome, plasma membrane | 94.46 | 96.11 |
| KRH29926 | Soybean | nucleus | 42.26 | 42.26 |
| KRH24873 | Soybean | nucleus | 40.73 | 41.44 |
| KRH26426 | Soybean | plastid | 17.78 | 20.44 |
| Solyc09g007680.2.1 | Tomato | cytosol, nucleus, plasma membrane | 5.93 | 5.98 |
| TraesCS6A01G001000.1 | Wheat | cytosol, nucleus, plasma membrane | 4.78 | 5.68 |
| HORVU6Hr1G001690.9 | Barley | cytosol, nucleus | 4.59 | 5.22 |
| Solyc06g016770.2.1 | Tomato | cytosol, nucleus, plasma membrane | 4.59 | 4.76 |
| TraesCS6D01G005100.1 | Wheat | plasma membrane | 4.21 | 4.71 |
| Solyc07g044780.2.1 | Tomato | cytosol | 4.02 | 4.06 |
| Solyc01g067800.2.1 | Tomato | plastid | 2.68 | 3.65 |
Protein Annotations
| MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008270 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:IPR011016 | InterPro:IPR013083 | UniProt:K4DA91 |
| InterPro:MARCH-like | PFAM:PF12906 | PFscan:PS51292 | PANTHER:PTHR23012 | PANTHER:PTHR23012:SF25 | SMART:SM00744 |
| SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc11g069350.1 | EnsemblPlants:Solyc11g069350.1.1 | TMHMM:TMhelix | UniParc:UPI000276A93B | InterPro:Znf_RING-CH |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr11:+:53959576..53963435
Molecular Weight (calculated)
58233.3 Da
IEP (calculated)
8.548
GRAVY (calculated)
-0.215
Length
523 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEHKEKIM AEVVDNDEKI GVCENDFVIS TPKIERSSTI TEETTHAKHW RKPNLSLDIP SRTLDASPQE LVQIKRPFTP TPKRVNFLLT PSTCDSRITT
101: SSPGPSPCRG KSTIRNLFPK LSLKSRMNSD TEKVTVPDTG PAAAVVPQQE KVSISRSWSL TKMFTPRIKR TSSLPVTPIS HSNPESISGS INNSLTLGTK
201: ETHVCISRSM SLPVINKEKE GSNRRVEFFF RVIPSTPQVK DVDSSSVPAT SPTKVPEDNE QGGEDIPEEE AVCRICLVEL CEGGETLKME CSCKGELALA
301: HQECALKWFS IKGNKTCDVC RQEVKNLPVT LLRMQSVRNV NAGSNRFRHM ELNGHRVWQE LPILVIVSML AYFCFLEQLL VGKMGTGAIA ISLPFSCVLG
401: LLASMTSSTM VKRRFVWVYA SVQFALVVLF AHIFYSLVRV QPVLSILLST FAGFGVAMSA SSLLVEFFRW KRRRAALLEQ QQNADMVLPP GGWPQMNQPA
501: TTSRIGPQNH QHDIENPETF SWS
101: SSPGPSPCRG KSTIRNLFPK LSLKSRMNSD TEKVTVPDTG PAAAVVPQQE KVSISRSWSL TKMFTPRIKR TSSLPVTPIS HSNPESISGS INNSLTLGTK
201: ETHVCISRSM SLPVINKEKE GSNRRVEFFF RVIPSTPQVK DVDSSSVPAT SPTKVPEDNE QGGEDIPEEE AVCRICLVEL CEGGETLKME CSCKGELALA
301: HQECALKWFS IKGNKTCDVC RQEVKNLPVT LLRMQSVRNV NAGSNRFRHM ELNGHRVWQE LPILVIVSML AYFCFLEQLL VGKMGTGAIA ISLPFSCVLG
401: LLASMTSSTM VKRRFVWVYA SVQFALVVLF AHIFYSLVRV QPVLSILLST FAGFGVAMSA SSLLVEFFRW KRRRAALLEQ QQNADMVLPP GGWPQMNQPA
501: TTSRIGPQNH QHDIENPETF SWS
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.