CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29926	Soybean	nucleus	75.1	73.81
PGSC0003DMT400020932	Potato	cytosol, peroxisome, plasma membrane	41.25	41.25
Solyc11g069350.1.1	Tomato	cytosol, nucleus, plasma membrane	41.44	40.73
KRH26426	Soybean	plastid	20.04	22.64
KRH22901	Soybean	cytosol	8.56	9.3
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	7.0	7.16
KRH67679	Soybean	cytosol	4.67	5.48
KRH32447	Soybean	plasma membrane	4.86	5.14
TraesCS6A01G001000.1	Wheat	cytosol, nucleus, plasma membrane	4.28	5.0
KRH20994	Soybean	cytosol	2.92	4.89
TraesCS6D01G005100.1	Wheat	plasma membrane	4.09	4.5
KRG95972	Soybean	cytosol, nucleus, plasma membrane	3.89	4.44
KRH74078	Soybean	cytosol	3.89	3.87
KRH11284	Soybean	cytosol	3.11	3.79
HORVU6Hr1G001690.9	Barley	cytosol, nucleus	3.11	3.48
KRH17646	Soybean	cytosol, peroxisome, plasma membrane	3.11	3.43
KRH14034	Soybean	plasma membrane	3.31	3.24
KRG90054	Soybean	cytosol, peroxisome, vacuole	2.14	2.32

Protein Annotations

EntrezGene:100788108	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	EMBL:ACUP02007190	EnsemblPlantsGene:GLYMA_12G068000	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
UniProt:I1LQV9	InterPro:IPR011016	InterPro:IPR013083	EnsemblPlants:KRH24873	ProteinID:KRH24873	ProteinID:KRH24873.1
InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012	PANTHER:PTHR23012:SF25	SMART:SM00744
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000233D460	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr12:-:4986769..4992981

Molecular Weight (calculated)

56524.5 Da

IEP (calculated)

8.916

GRAVY (calculated)

-0.345

Length

514 amino acids

Sequence
(BLAST)

001: MNGTEEKPMT VSEEHDAGSC RRTVSLPVQK VDNPMGITEE TTHVPPRKRQ NLLLEIPSRT EECSQEFVAI KIPPTPSSNP TPTPKRVNFL VSSHSVDPPT
101: YNSPGPSTSR SKSSIRSLLP KLSFRYRTPI DIEKPNAAAP EISSSGIGEK SSISRSLSLT KIFTPRIKRT SSLPLDEIRQ SNNESSHGGS VGGPLNKRET
201: QRKIARSLSV PANNKDKSIR RMDSFFRVVP STPRVKEGNE LLATPTTNDT ENEDANGEDI AEEEAVCRIC LVDLCEGGET FKLECSCKGE LALAHQECAI
301: KWFSIKGNKT CDVCKEEVRN LPVTLLRIQS VRNRNNGGNR SQLEDVNGYR VWQEVPVLVI VSMLAYFCFL EQLLVGKMGT GAIAISLPFS CVLGLLSSMT
401: SSTMVKSRFI WIYASAQFAL VVLFAHIFYS VVHVQAVLSI LLATFAGFGV VMSGSSILVE FFRWRRRVQA LQEQQHGPAA QNPRTPNTPR PGSGSGPSNH
501: SQPVVQSQQN SNQS

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.