CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20994	Soybean	cytosol	30.33	41.69
KRG95972	Soybean	cytosol, nucleus, plasma membrane	4.27	4.0
KRH67679	Soybean	cytosol	4.03	3.88
TraesCS6A01G001000.1	Wheat	cytosol, nucleus, plasma membrane	3.79	3.64
HORVU6Hr1G001690.9	Barley	cytosol, nucleus	3.79	3.48
KRH29926	Soybean	nucleus	4.27	3.44
KRH24873	Soybean	nucleus	3.79	3.11
KRH17646	Soybean	cytosol, peroxisome, plasma membrane	3.32	3.0
KRH22901	Soybean	cytosol	3.32	2.96
KRH26426	Soybean	plastid	3.08	2.86
KRH32447	Soybean	plasma membrane	3.08	2.67
TraesCS6D01G005100.1	Wheat	plasma membrane	2.13	1.93
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	2.13	1.79
KRH14034	Soybean	plasma membrane	1.9	1.53
KRG90054	Soybean	cytosol, peroxisome, vacuole	1.66	1.47
KRH74078	Soybean	cytosol	1.18	0.97

Protein Annotations

EntrezGene:100527094	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	EMBL:ACUP02009199	EnsemblPlantsGene:GLYMA_15G099100	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
UniProt:I1MF85	InterPro:IPR011016	InterPro:IPR013083	EnsemblPlants:KRH11284	ProteinID:KRH11284	ProteinID:KRH11284.1
InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012	PANTHER:PTHR23012:SF84	SMART:SM00744
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000233B2D4	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr15:-:7710497..7715798

Molecular Weight (calculated)

46663.7 Da

IEP (calculated)

6.244

GRAVY (calculated)

-0.092

Length

422 amino acids

Sequence
(BLAST)

001: MQAPQAASAT DEAPEISHQA VPQRNKEVSD SGPGGRRPDI SLQVPPRPIG FGSTSSGRVL DHCQSFGKGI SSSRGFLRAL SLKRKGNVAD GERSSLLNSD
101: PKTAADGPNM ASISEIAWKR CTSLPVTPAS NLSPSVSTPI SARTYNEQTK PHKDVDRSKV SRSLSVPGRN VVIVRSVSFS TRSEQEQQDS NDDQITPVQV
201: EVTADEEIPE EEAVCRICFD VCDERNTFKM ECSCKGDLRL VHEECLIKWF STKGDKECDV CRQEVQNLPV TLLRVTSSVR QNRQLQGQHN LHPESISAWQ
301: DFVVLVLIST ICYFFFLEQL LLPELKTQAI IIAAPFAFTL GLLASIFAVI LAIKEYIWTY AALEFALVAL TVHLFYTMLH LTAIYAILLS SVLGFGIAMG
401: INYAYIQFVT WRLQVSHDDN PV

Best Arabidopsis Sequence Match ( AT3G06330.1 )
(BLAST)

001: MKMQDSAAQE PEIAIIVGDS SSSSLHSSSQ VTEKSTEDVP SCSHLDLSIQ IPSRSLPFGN GRNPKGSLKS TPSFKSGTTS SPRGILRNLS LKKKVISQPE
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV

Arabidopsis Description

AT3g06330/F24P17_21 [Source:UniProtKB/TrEMBL;Acc:Q9SQT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.