CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11284	Soybean	cytosol	41.69	30.33
AT5G18760.1	Thale cress	plastid	9.45	7.06
Bra023691.1-P	Field mustard	cytosol	8.79	6.91
CDY47182	Canola	cytosol	8.79	6.91
CDY02603	Canola	cytosol, peroxisome, plasma membrane	7.17	5.7
KRG95972	Soybean	cytosol, nucleus, plasma membrane	4.89	3.33
KRH22901	Soybean	cytosol	4.56	2.96
KRH24873	Soybean	nucleus	4.89	2.92
KRH29926	Soybean	nucleus	4.56	2.68
KRH26426	Soybean	plastid	3.58	2.42
KRH67679	Soybean	cytosol	2.93	2.05
KRH17646	Soybean	cytosol, peroxisome, plasma membrane	2.93	1.93
KRH32447	Soybean	plasma membrane	2.93	1.85
PGSC0003DMT400002459	Potato	plastid	1.3	1.53
KRH14034	Soybean	plasma membrane	2.61	1.53
KRG90054	Soybean	cytosol, peroxisome, vacuole	1.95	1.26
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	1.95	1.19
Solyc06g016770.2.1	Tomato	cytosol, nucleus, plasma membrane	1.95	1.19
KRH74078	Soybean	cytosol	1.95	1.16
PGSC0003DMT400002463	Potato	plasma membrane	0.33	0.55
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	0.65	0.06

Protein Annotations

EntrezGene:100777100	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	UniProt:A0A0R0GY62	EMBL:ACUP02008332	EnsemblPlantsGene:GLYMA_13G213600
GO:GO:0003674	GO:GO:0005488	GO:GO:0008270	GO:GO:0046872	InterPro:IPR011016	InterPro:IPR013083
EnsemblPlants:KRH20994	ProteinID:KRH20994	ProteinID:KRH20994.1	ProteinID:KRH20995.1	InterPro:MARCH-like	PFAM:PF12906
PFscan:PS51292	PANTHER:PTHR23012	PANTHER:PTHR23012:SF84	SMART:SM00744	SUPFAM:SSF57850	UniParc:UPI0006EE04D9
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:32728872..32731642

Molecular Weight (calculated)

33763.9 Da

IEP (calculated)

7.592

GRAVY (calculated)

-0.504

Length

307 amino acids

Sequence
(BLAST)

001: MREKGHACHC FIAQIQFSHE LLAVPQRNKE VSDGGPGGRR PDISLQVPPR PTGFGSTSGV RVLDHSQSFG KGISSSRGFL RALSFKRKGN VADGERSSLL
101: NSDPKTAADS PNMASISEIA WKRCTSLPVT PASNLSPSVS TPISARAYNE QTKPHKDVDC SKVSRSLSVP GRNVVIVRSV SFSTRSEQEQ QESNDDQITP
201: VPVEVTADEE IPEEEAVCRI CFDVCDERNT FKMECSCKGD LRLVHEECLV KWFSTKGDKK CDVCRLEVQN LPVTLLRVTS SVQRENRQLQ GQQNLHPESI
301: SLPCVVG

Best Arabidopsis Sequence Match ( AT5G18760.1 )
(BLAST)

001: MMEGSSIQPP RNFVLAKDSS TGSSSSSSSS QVKEQSVEDV SRSQPSGSQL DVSIQIPPKP TPSLGILRNL SLKRKASLPN YERRLLLSPS VSETSEKPLV
101: ASPITSPYWK RCLSLPSSNS AKLSLVVSTT PVSAVVHSEQ PKSNKDGLHA SVSRSLSMNR VIVRAVSFDD NKNHISNEAN GDQITPVPAE ETEEEIPEEE
201: AVCRICLDVC EEGNTLKMEC SCKGDLRLVH EHCAIKWFST KGTRICDVCR QEVRNLPVIL LRVPTINQLT NRRELTQQSS EPQSISVGQE FVVLVLISTV
301: CYFFFLEHLL IRDLNSQAIF VAAPFSFTLA LLASTFAVIL AIREYIWTYA ALEFALVALL VHLLYATLRV PVIYAMLFAG ILGFGMAMCL NLLCICYSSR
401: PVRFPRNTNL V

Arabidopsis Description

At5g18760 [Source:UniProtKB/TrEMBL;Acc:Q1H5A5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.