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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plastid 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400074985 Potato cytosol, nucleus, plasma membrane 3.45 1.8
PGSC0003DMT400020932 Potato cytosol, peroxisome, plasma membrane 2.68 1.36
KRH20994 Soybean cytosol 1.53 1.3
CDY02603 Canola cytosol, peroxisome, plasma membrane 1.92 1.3
PGSC0003DMT400058815 Potato cytosol, peroxisome, plasma membrane 1.92 1.19
PGSC0003DMT400004459 Potato cytosol, nucleus, plasma membrane 2.3 1.16
Bra023691.1-P Field mustard cytosol 1.53 1.02
CDY47182 Canola cytosol 1.53 1.02
AT5G18760.1 Thale cress plastid 1.53 0.97
PGSC0003DMT400002463 Potato plasma membrane 0.38 0.55
GSMUA_Achr11P... Banana cytosol, nucleus, plastid 3.83 0.29
Protein Annotations
EnsemblPlants:PGSC0003DMT400002459EnsemblPlantsGene:PGSC0003DMG401000938Gene3D:3.30.40.10GO:GO:0003674GO:GO:0005488GO:GO:0008270
GO:GO:0046872InterPro:IPR011016InterPro:IPR013083InterPro:MARCH-likeInterPro:Znf_RING-CHInterPro:Znf_RING/FYVE/PHD
PANTHER:PTHR23012PANTHER:PTHR23012:SF118PFAM:PF12906PFscan:PS51292PGSC:PGSC0003DMG401000938SMART:SM00744
SUPFAM:SSF57850UniParc:UPI0002968873UniProt:M0ZK55MapMan:19.2.2.1.5.3.4::
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401000938]
Coordinates
chr7:+:42553203..42555567
Molecular Weight (calculated)
29288.1 Da
IEP (calculated)
8.331
GRAVY (calculated)
-0.498
Length
261 amino acids
Sequence
(BLAST)
001: MSSMKNLIPQ KSTRAKNVTH DGEKTVLIIP DMPLSDKPST SRSFSLNKVL FSSTTKSIRS LPETPMGTVE KPAEDNCLND HSELIKPEAQ QHMKRSFSVP
101: IHVKSGSLRR TDSNGGLIRV ISKVVRTTTD SDASADIPQE TENATDNTGE DIPEEEAVCR ICFVELGEES ETFKMECSCK GELALAHKVC TLKWFSIKGN
201: KICDVCKQEV RNLPVTLLKI QNPPTAARRS QTVTQQREVP RYRQVQLIKF CGFPYFHLNF M
Best Arabidopsis Sequence Match ( AT5G60580.1 )
(BLAST)
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.