Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400020932 | Potato | cytosol, peroxisome, plasma membrane | 8.29 | 2.92 |
| PGSC0003DMT400004459 | Potato | cytosol, nucleus, plasma membrane | 7.18 | 2.52 |
| PGSC0003DMT400058815 | Potato | cytosol, peroxisome, plasma membrane | 4.42 | 1.9 |
| CDY02603 | Canola | cytosol, peroxisome, plasma membrane | 3.87 | 1.81 |
| AT5G18760.1 | Thale cress | plastid | 3.87 | 1.7 |
| Bra023691.1-P | Field mustard | cytosol | 3.31 | 1.53 |
| CDY47182 | Canola | cytosol | 3.31 | 1.53 |
| PGSC0003DMT400074985 | Potato | cytosol, nucleus, plasma membrane | 3.87 | 1.4 |
| PGSC0003DMT400002459 | Potato | plastid | 0.55 | 0.38 |
| KRH20994 | Soybean | cytosol | 0.55 | 0.33 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 3.31 | 0.17 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400002463 | EnsemblPlantsGene:PGSC0003DMG402000938 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:MARCH-like |
| PANTHER:PTHR23012 | PANTHER:PTHR23012:SF118 | PGSC:PGSC0003DMG402000938 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000295EC86 |
| UniProt:M0ZK56 | MapMan:19.2.2.1.5.3.4 | : | : | : | : |
Description
Zinc finger (C3HC4 type RING finger) family protein [Source:PGSC_GENE;Acc:PGSC0003DMG402000938]
Coordinates
chr7:+:42556799..42563576
Molecular Weight (calculated)
20293.5 Da
IEP (calculated)
8.696
GRAVY (calculated)
0.217
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSMLAYFCF LEQLLVSDLG ARALAISLPF SCVLGLLSSL IASTMVSKSY IWAYASFQFA IVILFAHIFY AVLNVSALLS VLLSSFTGFG IAISTNSLLV
101: EYLRWRSSRR LRSSPAQTTS IMQPHSTLPV QRYFSYIDNP SGQQHHHDHR PHNNQQQQQP LHPVVEQSEN PGLPEIRIQT A
101: EYLRWRSSRR LRSSPAQTTS IMQPHSTLPV QRYFSYIDNP SGQQHHHDHR PHNNQQQQQP LHPVVEQSEN PGLPEIRIQT A
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.