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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • cytosol 1
  • plasma membrane 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, peroxisome, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY02603 Canola cytosol, peroxisome, plasma membrane 60.58 64.51
Bra023691.1-P Field mustard cytosol 61.07 64.19
CDY47182 Canola cytosol 61.07 64.19
GSMUA_Achr1P11310_001 Banana cytosol, nucleus, plasma membrane 16.79 16.43
AT3G06330.1 Thale cress cytosol 12.17 11.74
KRH20994 Soybean cytosol 7.06 9.45
PGSC0003DMT400002463 Potato plasma membrane 1.7 3.87
AT5G03180.2 Thale cress nucleus 3.41 3.0
AT3G09760.1 Thale cress nucleus 3.41 2.85
AT5G60580.4 Thale cress cytosol, nucleus, peroxisome 3.41 2.83
Solyc06g016770.2.1 Tomato cytosol, nucleus, plasma membrane 2.19 1.79
PGSC0003DMT400074985 Potato cytosol, nucleus, plasma membrane 1.95 1.6
PGSC0003DMT400002459 Potato plastid 0.97 1.53
Protein Annotations
MapMan:19.2.2.1.5.3.4Gene3D:3.30.40.10EntrezGene:831994ProteinID:AED92608.1ArrayExpress:AT5G18760EnsemblPlantsGene:AT5G18760
RefSeq:AT5G18760TAIR:AT5G18760RefSeq:AT5G18760-TAIR-GEnsemblPlants:AT5G18760.1TAIR:AT5G18760.1Unigene:At.31385
EMBL:BT025559GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0008150GO:GO:0008270
GO:GO:0016020GO:GO:0016021GO:GO:0046872InterPro:IPR011016InterPro:IPR013083InterPro:MARCH-like
RefSeq:NP_197377.2PFAM:PF12906PO:PO:0000005PO:PO:0000013PO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS51292PANTHER:PTHR23012PANTHER:PTHR23012:SF84
UniProt:Q1H5A5SMART:SM00744SUPFAM:SSF57850TMHMM:TMhelixUniParc:UPI0000196DCDInterPro:Znf_RING-CH
InterPro:Znf_RING/FYVE/PHDSEG:seg::::
Description
At5g18760 [Source:UniProtKB/TrEMBL;Acc:Q1H5A5]
Coordinates
chr5:-:6258263..6261016
Molecular Weight (calculated)
45380.9 Da
IEP (calculated)
7.588
GRAVY (calculated)
0.076
Length
411 amino acids
Sequence
(BLAST)
001: MMEGSSIQPP RNFVLAKDSS TGSSSSSSSS QVKEQSVEDV SRSQPSGSQL DVSIQIPPKP TPSLGILRNL SLKRKASLPN YERRLLLSPS VSETSEKPLV
101: ASPITSPYWK RCLSLPSSNS AKLSLVVSTT PVSAVVHSEQ PKSNKDGLHA SVSRSLSMNR VIVRAVSFDD NKNHISNEAN GDQITPVPAE ETEEEIPEEE
201: AVCRICLDVC EEGNTLKMEC SCKGDLRLVH EHCAIKWFST KGTRICDVCR QEVRNLPVIL LRVPTINQLT NRRELTQQSS EPQSISVGQE FVVLVLISTV
301: CYFFFLEHLL IRDLNSQAIF VAAPFSFTLA LLASTFAVIL AIREYIWTYA ALEFALVALL VHLLYATLRV PVIYAMLFAG ILGFGMAMCL NLLCICYSSR
401: PVRFPRNTNL V
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.